PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013631897.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 133aa    MW: 15438.7 Da    PI: 8.3148
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013631897.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.24.5e-1619110196
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                     f k++  +d +++++ ++p + +++  ++     ++++  + g sWev +  +k+++  y+ ++GW++Fv++n L  ++fv+F+++g+++f   v
  XP_013631897.1  19 FSKTFACADLSSECMRTFPFDLMKSLPKE-DLANKMVIIAKCGSSWEVDI--SKNPRFyYMEKSGWNQFVRDNALGKNEFVTFTHKGSMCF--DV 108
                     67888888999999999999999888533.46679999************..******566669**********************99999..55 PP

                     EE CS
              B3  95 kv 96 
                      +
  XP_013631897.1 109 NI 110
                     54 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.1E-1613114IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.29E-1714118IPR015300DNA-binding pseudobarrel domain
CDDcd100175.37E-1418111No hitNo description
PfamPF023623.0E-1319109IPR003340B3 DNA binding domain
PROSITE profilePS5086311.43419114IPR003340B3 DNA binding domain
SMARTSM010191.6E-1519114IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 133 aa     Download sequence    Send to blast
MDMNSWFDRV KEDRKNLSFS KTFACADLSS ECMRTFPFDL MKSLPKEDLA NKMVIIAKCG  60
SSWEVDISKN PRFYYMEKSG WNQFVRDNAL GKNEFVTFTH KGSMCFDVNI YGKDEKEIVR  120
PPIMASSNNP KSF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013631897.17e-96PREDICTED: B3 domain-containing protein At2g35310
SwissprotQ5PNU44e-44Y2531_ARATH; B3 domain-containing protein At2g35310
TrEMBLA0A078JUU23e-89A0A078JUU2_BRANA; BnaAnng36900D protein
STRINGBra021943.1-P5e-87(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56521135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35310.12e-45B3 family protein