PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013630257.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family TCP
Protein Properties Length: 235aa    MW: 24258.2 Da    PI: 10.8713
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013630257.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP126.92.1e-39271902118
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssas...nsssg..... 88 
                     a+kk + +++hTkv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ ++s s s+        +     
  XP_013630257.1  27 AVKKPPAKDRHTKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFS-TASLSTSSPfalG---Krgvra 117
                     79**************************************************************99999777.2222222222220...134556 PP

             TCP  89 ........................................................kaaksaakskksqksaasalnlakesraka 118
                                                                             +             ++a++l + ++++++a
  XP_013630257.1 118 gegeagagagggltvgptmgaslmsgggfwavparpdfgqvwsfatgappemlftqQ-------------QQAATLFVRQQQQQQA 190
                     666667777888888888888888888888888888888888666555555555432.............2222222222222222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136927.593387IPR017887Transcription factor TCP subgroup
PfamPF036342.2E-3233172IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MTSNDGSGPN GVIAEHPSAV NKGTLNAVKK PPAKDRHTKV DGRGRRIRMP IICAARVFQL  60
TRELGHKSDG QTIEWLLRQA EPSIIAATGT GTTPASFSTA SLSTSSPFAL GKRGVRAGEG  120
EAGAGAGGGL TVGPTMGASL MSGGGFWAVP ARPDFGQVWS FATGAPPEML FTQQQQAATL  180
FVRQQQQQQA SAAAAMGEAS AARVGNYLPG HHLNLLASLS GGNTGSGRRE EDNPR
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in leaves, roots, and stems. {ECO:0000269|PubMed:19286557}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the regulation of the circadian clock. Acts as a repressor of CCA1 by binding to its promoter. No binding to the LHY promoter. {ECO:0000269|PubMed:19286557}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013630257.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893320.0AC189332.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB038E05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013630257.11e-170PREDICTED: transcription factor TCP21-like
SwissprotQ9FTA21e-111TCP21_ARATH; Transcription factor TCP21
TrEMBLA0A0D3B0A01e-169A0A0D3B0A0_BRAOL; Uncharacterized protein
TrEMBLA0A3P6AN881e-169A0A3P6AN88_BRAOL; Uncharacterized protein
STRINGBo3g004850.11e-169(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17822685
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08330.13e-41TCP family protein
Publications ? help Back to Top
  1. Wu JF, et al.
    LWD-TCP complex activates the morning gene CCA1 in Arabidopsis.
    Nat Commun, 2016. 7: p. 13181
    [PMID:27734958]
  2. Ng DW,Chen HH,Chen ZJ
    Heterologous protein-DNA interactions lead to biased allelic expression of circadian clock genes in interspecific hybrids.
    Sci Rep, 2017. 7: p. 45087
    [PMID:28345627]
  3. Lee CM, et al.
    Decoys Untangle Complicated Redundancy and Reveal Targets of Circadian Clock F-Box Proteins.
    Plant Physiol., 2018. 177(3): p. 1170-1186
    [PMID:29794020]