PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013630078.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family FAR1
Protein Properties Length: 754aa    MW: 86873.1 Da    PI: 6.7373
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013630078.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR198.38.2e-3152144291
            FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                     fYn+YA+++GFs+r+s+s++s+r+g i++r+fvC keg+r+ ++k+  +++ +r+r+ tr+gCka+l vk+++ +gkw v+ +++eHnHel+p
  XP_013630078.1  52 FYNSYARRIGFSTRVSSSRRSRRDGAIIQRQFVCAKEGFRNMNEKRtkDREIKRPRTITRVGCKASLSVKMHDsSGKWAVSGFVKEHNHELVP 144
                     9***************************************999888555667889*****************99*****************86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.3E-2952144IPR004330FAR1 DNA binding domain
PfamPF105517.4E-33264356IPR018289MULE transposase domain
PfamPF044346.9E-11532578IPR007527Zinc finger, SWIM-type
PROSITE profilePS5096610.497532580IPR007527Zinc finger, SWIM-type
SMARTSM005751.7E-7555582IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 754 aa     Download sequence    Send to blast
MDNEEVLDFD VDDDGIDIEP NDMLDDTTYF PDGDLEPYEG LEFESEESAK AFYNSYARRI  60
GFSTRVSSSR RSRRDGAIIQ RQFVCAKEGF RNMNEKRTKD REIKRPRTIT RVGCKASLSV  120
KMHDSSGKWA VSGFVKEHNH ELVPPDQVHC LRSHRQISGP AKALIDTLQA AGMGPRRIMS  180
ALIKEYGGIS KVGFTEVDCR NYMRNNRHKS IQGEIQLLLD YLRQMNAHNP TFFYSLQGSS  240
EDVGNVFWAD PKAITDFTYF GDTVTFDTTY RSNRYRLPFA PFTGVNHHGQ PILFGCAFIV  300
NENEASFVWL FKTWLAAMSG HSPVSITTDH DAVIRAAVMQ VFPEARHRFC KWHIFKKCQE  360
KLSHVFLRHP SFESDLHKTV NLTDSVEDFE SCWFSLLDKY ELRDHDWLRA LYSDRRQWVP  420
VYLRDTFFAE MSSTQRSDSI NSYFDGYINA STNLSQFFKL YEKALESRLE KEVKADYDTM  480
NSPPVLKTPS PMEKQASELY TRKLFTRFQE ELVGTLTFMA SKADDDGDLG TYQVAKYGET  540
NKALCVKFNI LEMRANCSCQ MFEFSGIVCR HILAVFRVTN LLTLPPYYIL KRWTRNAKSS  600
VIFDDYGLHA YDNYLESHTV RYNTLRHKAF SFVQEAGKSL YTCDVALVAL QEAAKTVSLE  660
MKNEVRRTMA NGHVKGSSAS GGEQVLRNED SQQDEPEDEM DKKIIELRNE LELANRRCEA  720
YRTNLLSVLK EMEDQKLQVS IKVQNIKISL KDSL
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269|PubMed:15591448}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013630078.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013630078.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5
SwissprotQ9SZL80.0FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A0D3B5V40.0A0A0D3B5V4_BRAOL; Uncharacterized protein
STRINGBo3g034290.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM11826253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.10.0FAR1-related sequence 5
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]