PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013629393.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 502aa    MW: 55864.5 Da    PI: 9.1944
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013629393.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.91.8e-0599121123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++C+k F r  nL+ H r H
  XP_013629393.1  99 FVCEICNKGFQRDQNLQLHKRGH 121
                     89******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.57E-698121No hitNo description
Gene3DG3DSA:3.30.160.601.0E-598121IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF121714.3E-599121IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.01799121IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.90799121IPR007087Zinc finger, C2H2
PROSITE patternPS000280101121IPR007087Zinc finger, C2H2
SMARTSM00355240141171IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.57E-6171196No hitNo description
SMARTSM00355180176196IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 502 aa     Download sequence    Send to blast
MMSKDILLHQ QVQQQQQEEN MSILTSASGD QTSASSGIRT EASGSNYFPH HQQQQEQQQQ  60
FFVPESQPQK KRRNQPGNPD PESEVIALSP KTLMARNRFV CEICNKGFQR DQNLQLHKRG  120
HNLPWKLKQR SNKEVIRKKV YVCPEASCVH HDPSRALGDL TGIKKHFCRK HGEKKWKCDK  180
CSKKYAVQSD CKAHSKTCGT KEYRCDCGTI FSRRDSFITH RAFCEALAKE TAREVVIPQE  240
QNHQPNPILV HQSTFHHQHH QAQPNMNFSS SSPSSHNIIN TLHFETNNNG TNNSNTSSNH  300
LHTFPVKKEQ QQSNDHMINY HHQSIPPWLA PHDLTFPNPN PNNGGGGLFS LAAFPAMSAT  360
ALLQKAAQMG STKTPPLPPT TDLERSAHHN TLTTTMAAMM TSPSGFISSN NNNQVFLQGY  420
HGGEEAFDHT FSALLRTNVD TTTAGSDTKK RGGGGGVGEG LTRDFLGLRP LMSHNEILSI  480
AGLGNCISGA APDQLRPKPW KG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-30172233364Zinc finger protein JACKDAW
5b3h_F1e-30172233364Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1125138KLKQRSNKEVIRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013629393.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3617970.0AF361797.1 Arabidopsis thaliana AT3g13810/MCP4_2 mRNA, complete cds.
GenBankAY0916930.0AY091693.1 Arabidopsis thaliana AT3g13810/MCP4_2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013629390.10.0PREDICTED: protein indeterminate-domain 11-like isoform X1
RefseqXP_013629392.10.0PREDICTED: protein indeterminate-domain 11-like isoform X1
SwissprotQ9LRW70.0IDD11_ARATH; Protein indeterminate-domain 11
TrEMBLA0A0D3BB630.0A0A0D3BB63_BRAOL; Uncharacterized protein
STRINGBo3g065750.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13810.10.0indeterminate(ID)-domain 11
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]