PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013628241.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 322aa    MW: 36658.6 Da    PI: 8.0953
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013628241.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3101.26.1e-3244150199
                     EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                     f+k ltpsdv+k++rlv+pk++ae++        ++  e+++ l++edesg+ W+++++y+++s++yvltkGW+++vk+++L+  D+v F+++++
  XP_013628241.1  44 FEKSLTPSDVGKLNRLVIPKQHAEKYfplnttisDNADEKGTLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKDKQLDPADVVFFQRQRS 138
                     99*****************************99966667899*************************************************9988 PP

                     SEE..EEEEE-S CS
              B3  88 sefelvvkvfrk 99 
                     ++++l+++++r+
  XP_013628241.1 139 DSRRLFIGWRRR 150
                     9999******97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.2E-3938157IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.05E-2939151IPR015300DNA-binding pseudobarrel domain
CDDcd100171.94E-2643141No hitNo description
SMARTSM010194.7E-2344151IPR003340B3 DNA binding domain
PROSITE profilePS5086313.56344151IPR003340B3 DNA binding domain
PfamPF023624.0E-2944150IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MSVNHYSTDN HHTLFWQNLH TTDTSEPTTT AAAWLSEDQK EYLFEKSLTP SDVGKLNRLV  60
IPKQHAEKYF PLNTTISDNA DEKGTLLSFE DESGKCWRFR YSYWNSSQSY VLTKGWSRYV  120
KDKQLDPADV VFFQRQRSDS RRLFIGWRRR GQSSSSAANP TSYSSSMTAP PYSNYSNRPA  180
HSEYSHYGAA VATATETHSI PSSSAVRSSR TVRLFGVNLE CQMDEDDGDD SVATAAAAEC  240
PRHDSYYGQN MYNYYTPQPH NMEVQKRPVI RTWFPFAQRP VLRTWFPIAN HLIPLVRNQP  300
ALIPITQGPG TNAALTLNFG WA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A5e-484116211129DNA-binding protein RAV1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895733e-74AC189573.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH010N11, complete sequence.
GenBankCP0026883e-74CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
GenBankAB0067003e-74AB006700.2 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MHF15.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013722540.10.0PREDICTED: B3 domain-containing protein At5g06250-like isoform X1
RefseqXP_013628241.10.0PREDICTED: B3 domain-containing protein At5g06250-like isoform X1
SwissprotQ9FNI31e-123Y5625_ARATH; B3 domain-containing protein At5g06250
TrEMBLA0A0D3AZZ50.0A0A0D3AZZ5_BRAOL; Uncharacterized protein
STRINGBra005886.1-P1e-164(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122028100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06250.21e-112B3 family protein