PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013627875.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 255aa    MW: 28619.9 Da    PI: 6.4215
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013627875.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.31.1e-1987136255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr+++ +g+W+AeIrdp     + +r++lg+f tae Aa a+++a+++++g
  XP_013627875.1  87 HYRGVRQRP-WGKWAAEIRDPQ----KaARVWLGTFETAEAAALAYDEAALRFKG 136
                     69*******.**********93....36***********************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.5E-3687150IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.6E-3387145IPR001471AP2/ERF domain
PROSITE profilePS5103224.90887144IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-2287145IPR016177DNA-binding domain
CDDcd000182.46E-2087145No hitNo description
PfamPF008475.5E-1487136IPR001471AP2/ERF domain
PRINTSPR003671.6E-118899IPR001471AP2/ERF domain
PRINTSPR003671.6E-11110126IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MNNGKRPFRA GESEEKKEAD DDDNIFPFFS ARSEYDTRAI VSALTQVIGN QSSTHDNNLH  60
HPVEYDQQDP IQHVPPTQDQ GHLRKIHYRG VRQRPWGKWA AEIRDPQKAA RVWLGTFETA  120
EAAALAYDEA ALRFKGSKAK LNFPERAQLA SNTSTITGLP NYYSSNNQTH YSNPQTNPQN  180
IPYYNQYYYN QYLQQGGNSN DAVSYSLAGG ETGGSMYSHQ TLSNTTSSSA GGSLRQQEDY  240
TSFWHFGDSS PNSGF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-2687146262ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00495DAPTransfer from AT5G07310Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013627875.10.0PREDICTED: ethylene-responsive transcription factor ERF115-like
SwissprotQ9LY291e-130EF115_ARATH; Ethylene-responsive transcription factor ERF115
TrEMBLA0A0D3B0440.0A0A0D3B044_BRAOL; Uncharacterized protein
STRINGBra005932.1-P1e-159(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM52921851
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07310.11e-106ERF family protein