PlantTFDB
Plant Transcription Factor Database
PlantRegMap/PlantTFDB v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013627321.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family LBD
Protein Properties Length: 347aa    MW: 39536.2 Da    PI: 5.2076
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013627321.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260122.62e-38381381101
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     aCaaCk++rr+Ca+dC+lapyfpaeqpk f+nvh+lFG++ ++k+l++l+e +r++am+s+++++ +r r+Pv+G++g+ ++lq  +  +++el+
  XP_013627321.1  38 ACAACKYQRRRCAADCPLAPYFPAEQPKLFQNVHRLFGVRSIVKILENLDEVQRPEAMKSIIFQSYVRDRNPVHGCLGITQQLQYMIWVAEEELK 132
                     7********************************************************************************************** PP

          DUF260  96 llkeel 101
                     +++++l
  XP_013627321.1 133 AVNSQL 138
                     999875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.30437138IPR004883Lateral organ boundaries, LOB
PfamPF031956.1E-3538135IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009556Biological Processmicrosporogenesis
GO:0009786Biological Processregulation of asymmetric cell division
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MSQIKTIHNP IGSLERFLDL LLISLIVYMT LKGGTSGACA ACKYQRRRCA ADCPLAPYFP  60
AEQPKLFQNV HRLFGVRSIV KILENLDEVQ RPEAMKSIIF QSYVRDRNPV HGCLGITQQL  120
QYMIWVAEEE LKAVNSQLQL YRSGQNHPNP HNMMIHEIGE KQEDLTSQLD LGMGLPVNNN  180
NQGNNTIPFF SPVSETQQQQ PHMSYCSDQV NNHDYNPIPD SCKEVLNNHN TSLAWGQNQF  240
PYNHHNYGFI NQNEHCSETK NNNSVMAIQS QLVNLQMASN QQKEEVDDQN YDEIHQFLEI  300
IDESQSFTET KEVYASSSGE SLKEPIDEIG EKELRRAATC FSLTSVN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-25341457118LOB family transfactor Ramosa2.1
5ly0_B3e-25341457118LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013627321.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013627321.10.0PREDICTED: LOB domain-containing protein 27-like
SwissprotQ9STS61e-122LBD27_ARATH; LOB domain-containing protein 27
TrEMBLA0A0D3BHY00.0A0A0D3BHY0_BRAOL; Uncharacterized protein
TrEMBLA0A3P6B2750.0A0A3P6B275_BRAOL; Uncharacterized protein
STRINGBo3g135950.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63032746
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47870.11e-124LOB domain-containing protein 27
Publications ? help Back to Top
  1. Kim MJ,Kim M,Kim J
    Combinatorial interactions between LBD10 and LBD27 are essential for male gametophyte development in Arabidopsis.
    Plant Signal Behav, 2015. 10(8): p. e1044193
    [PMID:26252070]
  2. Kim M,Kim MJ,Pandey S,Kim J
    Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development.
    Plant Cell Physiol., 2016. 57(11): p. 2291-2299
    [PMID:27519310]