PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013627204.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 195aa    MW: 22214.9 Da    PI: 7.6297
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013627204.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.10.0001497119123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++C + F ++  L  H++ H
  XP_013627204.1  97 FSCNYCQRKFYSSQALGGHQNAH 119
                     89******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.7E-694124No hitNo description
PROSITE profilePS5015711.09497124IPR007087Zinc finger, C2H2
PROSITE patternPS00028099119IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MSFEETYTHL YTLYIRPLMP ETFKHTSLFL IISLTSLFSL TKHLGMDFQP NTSLRLSLPS  60
YKNHQLNLEL VLDPSSMSSS SSSSTNSSSC LEQPRVFSCN YCQRKFYSSQ ALGGHQNAHK  120
LERTLAKKSR ELFRSSTTVD VDQPYPFSGR FELYGRGYEG FVESGGPRDF SGRRVPESGI  180
DQDQEMSHLD LSLRL
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed at in the abscission zone (AZ) of petals, stamens, sepals and siliques. Expressed at lower levels in stamens, carpels, cotyledons, major veins of rosette leaves, trichomes of inflorescence leaves and stems. {ECO:0000269|PubMed:18192438}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of floral organ abscission. Participates in processes that directly or indirectly influence shedding of floral organs. {ECO:0000269|PubMed:18192438}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013627204.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013627204.11e-141PREDICTED: zinc finger protein 2
RefseqXP_022554540.11e-141zinc finger protein 2-like
RefseqXP_022554547.11e-141zinc finger protein 2-like
SwissprotQ392614e-89ZFP2_ARATH; Zinc finger protein 2
TrEMBLA0A397ZTX31e-116A0A397ZTX3_BRACM; Uncharacterized protein
STRINGBra006815.1-P1e-106(Brassica rapa)
STRINGBo3g019270.11e-106(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66212844
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57520.13e-89zinc finger protein 2