PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013627138.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 134aa    MW: 15145.1 Da    PI: 5.7984
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013627138.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.76.6e-1617931195
                    HHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3 11 lksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95
                    + s  +++p  f+++h + k+++kt +l++  s + Wev        +++ lt+GWk+F+ a++L+ gD+v+Fk++g++ f  +v+
  XP_013627138.1 17 FHS-GITIPLGFFSKHIERKTNQKTWKLRSdASDKIWEVIQ------EGMRLTGGWKDFATAHDLRIGDIVIFKHEGDMVF--HVT 93
                    444.59**********77788899****997888*****99......4455***********************9999998..766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.5E-213100IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-214104IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.857698IPR003340B3 DNA binding domain
CDDcd100173.18E-18795No hitNo description
SMARTSM010191.5E-19998IPR003340B3 DNA binding domain
PfamPF023621.1E-101890IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 134 aa     Download sequence    Send to blast
MANPHEPHFL KPLLPGFHSG ITIPLGFFSK HIERKTNQKT WKLRSDASDK IWEVIQEGMR  60
LTGGWKDFAT AHDLRIGDIV IFKHEGDMVF HVTPFGPSCC EIQYTDPDIN KEEADAGDAD  120
DNEITHIASS SRMI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894641e-142AC189464.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB075L03, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013590770.12e-97PREDICTED: B3 domain-containing protein REM9-like
RefseqXP_013613869.12e-97PREDICTED: B3 domain-containing protein REM9-like
RefseqXP_013627138.12e-97PREDICTED: B3 domain-containing protein REM9-like
SwissprotO817788e-45REM9_ARATH; B3 domain-containing protein REM9
SwissprotQ8H2D05e-45REM7_ARATH; B3 domain-containing protein REM7
TrEMBLA0A0D3B5V22e-97A0A0D3B5V2_BRAOL; Uncharacterized protein
STRINGBra037507.1-P4e-76(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31690.11e-46B3 family protein