PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013626721.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 285aa    MW: 32831.7 Da    PI: 10.1324
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013626721.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B362.28.2e-2019113199
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                     ffk++ ++d +++++  +p +f+ ++ +k+  s ++++++++grsWev +  + +++  y+ ++GW++Fv++n L +++fv+F+++g ++f  +v
  XP_013626721.1  19 FFKIFHSADLSSESMRGIPYDFM-KNVSKEDFSCKMVIRTKWGRSWEVDI--SMNPRFyYMEKSGWNQFVSDNALGSNEFVTFTHSGLMCF--NV 108
                     89***999***************.6656778999****************..999999566669********************9988999..88 PP

                     EEE-S CS
              B3  95 kvfrk 99 
                      ++r+
  XP_013626721.1 109 NIYRE 113
                     88775 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.1E-1913115IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.08E-1815119IPR015300DNA-binding pseudobarrel domain
CDDcd100172.16E-1618112No hitNo description
PfamPF023629.6E-1819113IPR003340B3 DNA binding domain
SMARTSM010191.4E-2219114IPR003340B3 DNA binding domain
PROSITE profilePS5086313.49319114IPR003340B3 DNA binding domain
SuperFamilySSF1019368.44E-13182272IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.0E-9184273IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.418184277IPR003340B3 DNA binding domain
SMARTSM010197.3E-4187277IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MEWNRGFGRV KEERKSSSFF KIFHSADLSS ESMRGIPYDF MKNVSKEDFS CKMVIRTKWG  60
RSWEVDISMN PRFYYMEKSG WNQFVSDNAL GSNEFVTFTH SGLMCFNVNI YRESGKEIVL  120
PHATTPFSGI KNEEGERSYK DVKKEDESMG GVGHVEIGES SRGAALRKKK AEKHKRRKKV  180
KYGVPRFKIT ITKSYLKSLP IPTFFDKYLK SESKVYKIHH SEGDGSWEVL SLVHQAHIVL  240
SRGWIKLARE YPLAVGDRCT FHLVKPTEFV LTSKKAKAIE ISISD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013626721.10.0PREDICTED: B3 domain-containing protein At3g17010-like
SwissprotQ9LSP62e-93Y3701_ARATH; B3 domain-containing protein At3g17010
TrEMBLA0A0D3BBP80.0A0A0D3BBP8_BRAOL; Uncharacterized protein
STRINGBra001647.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56521135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G17010.15e-91B3 family protein