PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013626500.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family SBP
Protein Properties Length: 135aa    MW: 15768.3 Da    PI: 8.0624
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013626500.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP132.91.1e-4157134178
                     --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
             SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                     +Cqve+C+ad+s+ak+yh+rhkvCe+h+kapvv +sg  qrfCqqCsrfh+l+efDe+krsCrrrLa+hnerrrk+++
  XP_013626500.1  57 CCQVERCTADMSRAKQYHKRHKVCEFHAKAPVVRISGGYQRFCQQCSRFHDLREFDEAKRSCRRRLAGHNERRRKSTN 134
                     6**************************************************************************976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0375757.8E-561135IPR017238Squamosa promoter-binding protein
Gene3DG3DSA:4.10.1100.103.1E-3251119IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.81255132IPR004333Transcription factor, SBP-box
SuperFamilySSF1036125.1E-3756133IPR004333Transcription factor, SBP-box
PfamPF031106.9E-3258131IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009911Biological Processpositive regulation of flower development
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010229Biological Processinflorescence development
GO:0010321Biological Processregulation of vegetative phase change
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 135 aa     Download sequence    Send to blast
MSTRRSNAEG KRSLREMSEE EEDTFEEEDG EEQEEEEASE KKQKGKATSS SSNSGVCCQV  60
ERCTADMSRA KQYHKRHKVC EFHAKAPVVR ISGGYQRFCQ QCSRFHDLRE FDEAKRSCRR  120
RLAGHNERRR KSTNE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-3950131284squamosa promoter binding protein-like 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00290DAPTransfer from AT2G33810Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2411461e-86AC241146.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH072P15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013626500.13e-93PREDICTED: squamosa promoter-binding-like protein 3
RefseqXP_013680760.13e-93PREDICTED: squamosa promoter-binding-like protein 3
RefseqXP_013744507.13e-93PREDICTED: squamosa promoter-binding-like protein 3
RefseqXP_013744508.13e-93PREDICTED: squamosa promoter-binding-like protein 3
SwissprotP930159e-61SPL3_ARATH; Squamosa promoter-binding-like protein 3
TrEMBLA0A078CU663e-93A0A078CU66_BRANA; BnaC03g18800D protein
TrEMBLA0A0D3B4R83e-93A0A0D3B4R8_BRAOL; Uncharacterized protein
STRINGAT2G33810.12e-58(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM86828118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33810.11e-56squamosa promoter binding protein-like 3