PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013626191.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 428aa    MW: 46510 Da    PI: 6.6992
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013626191.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.86.1e-063173561054
                     HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     + R +++ ++++ L++l+ +      +K + a++L +A+eYIk L
  XP_013626191.1 317 KVRKEKMGDRIAALQQLVSPF-----GKTDAASVLSEAIEYIKFL 356
                     56889999***********98.....8****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.779307356IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0012313362IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-11317371IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.57E-6317361No hitNo description
Gene3DG3DSA:4.10.280.107.6E-10321365IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MGDHHDFINS GSWWKVSSSS STSSSMRASS IVSGGSDVFH EKVHHSLATD HHLQMIGLGL  60
SSQPPVDQWN QPLLRGDSKA ETSFGVMLQE NLNLDATSNA NAIQESDSSN HQALWRDTQI  120
NNSDFKPQLN MTSSNRGFFL ENQFSPHGSS STDSSTVTCQ GFAVDNSLYG TATTPSSSSA  180
MFHQGAGFNL PGSSDQQPSR NHQQPNLGYG NYDQMASTWF SRSSPPKPNS PLRFSNNATF  240
WNPAATAGNV GPTHHDASSN FFPALQPPQI HAPSFDEQKS ITKVPDSRSN EVKRGGADQP  300
AAKRAKSEAP SPSPASKVRK EKMGDRIAAL QQLVSPFGKT DAASVLSEAI EYIKFLHQQV  360
SALSNPYMKS GASLQHQQMS DHHKELEVSE EPDLRSRGLC LVPVSSIFPV TQDTTVDFWT  420
PTFGGTFR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0085800.0BT008580.1 Arabidopsis thaliana clone U50947 unknown protein (At3g20640) mRNA, complete cds.
GenBankAK1180540.0AK118054.1 Arabidopsis thaliana At3g20640 mRNA for putative bHLH transcription factor (bHLH123), complete cds, clone: RAFL19-30-D14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013681203.10.0PREDICTED: transcription factor bHLH123-like isoform X1
RefseqXP_013626191.10.0PREDICTED: transcription factor bHLH123-like isoform X1
SwissprotQ8GXT30.0BH123_ARATH; Transcription factor bHLH123
TrEMBLA0A078H4H00.0A0A078H4H0_BRANA; BnaC03g41710D protein
TrEMBLA0A0D3BCF90.0A0A0D3BCF9_BRAOL; Uncharacterized protein
STRINGBra001798.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40242553
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.10.0bHLH family protein