PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013624565.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family M-type_MADS
Protein Properties Length: 260aa    MW: 29260.3 Da    PI: 6.8762
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013624565.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF35.61.2e-111151343
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                    i++ s r+ t+  R++g+lKK  E+ +LCd++++ +i+s+ 
  XP_013624565.1 11 ISDVSARKRTLNLRKKGLLKKLDEIKTLCDVDACAVIYSPY 51
                    89999**********************************86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006613.638149IPR002100Transcription factor, MADS-box
SMARTSM004321.4E-15160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.83E-19295IPR002100Transcription factor, MADS-box
PfamPF003192.1E-111152IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MTRKKTNLAY ISDVSARKRT LNLRKKGLLK KLDEIKTLCD VDACAVIYSP YNPTPEVWPS  60
NSEVQKVMDK FENLPEEKQT KRSFNHEEFL NQTITKVQNQ VKKLIEGNND KLMEELMFSC  120
LNGNMGDLAI DDSNRGNLCE FIDGHLKKLY HHKNVFLKNT HLETGESSSL AMAMGMPPVA  180
MAEAGSSFFN SPQQTNESQP LVTSNQGQEH ISSHGNQFLN VPTFNFPQQP NEVKGTVSLN  240
QGLEQVISSQ LATMELILKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013624565.10.0PREDICTED: agamous-like MADS-box protein AGL80 isoform X4
TrEMBLA0A0D3AFE70.0A0A0D3AFE7_BRAOL; Uncharacterized protein
STRINGBra040248.1-P1e-159(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28700.13e-61AGAMOUS-like 46