PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013623371.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 316aa    MW: 35738.8 Da    PI: 6.0643
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013623371.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B397.11.1e-3039144199
                     EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS..S CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr..s 88 
                     f+kv tpsdv+k++rlv+pk++ae++    ++++e++  l +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F +  g+  +
  XP_013623371.1  39 FDKVVTPSDVGKLNRLVIPKQHAERYfpldSSSNEKGLLLNFEDLTGKLWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDIVSFLRCvGDteR 133
                     89****************************66677899************************************************943333256 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     + +l++ ++r+
  XP_013623371.1 134 DSRLFIDWRRR 144
                     77788888876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.8E-4033146IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.12E-2936129IPR015300DNA-binding pseudobarrel domain
CDDcd100178.71E-2537124No hitNo description
SMARTSM010198.8E-2339145IPR003340B3 DNA binding domain
PROSITE profilePS5086314.32539145IPR003340B3 DNA binding domain
PfamPF023626.1E-2839144IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009908Biological Processflower development
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MMTNLSLARE GEGEEEEEEE EEEAEAKKPT EEVEREHMFD KVVTPSDVGK LNRLVIPKQH  60
AERYFPLDSS SNEKGLLLNF EDLTGKLWRF RYSYWNSSQS YVMTKGWSRF VKDKKLDAGD  120
IVSFLRCVGD TERDSRLFID WRRRPKVPDY PTSTSHFPAG AMFPRFYSFP TATTSTSYNL  180
YNHQQPRHHH SGYCYPQIPR EFGYGYVVRS VDQRAVVADP LVIESVPVMM HGGARMNQAA  240
VGTAGKRLRL FGVDMECGES GVTNSTEEES SSSGGSLPRG GASPSSSMFQ LRLGNSSEDD  300
HLFKKGKSSL PFNLDQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A9e-483614411117DNA-binding protein RAV1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2324910.0AC232491.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB049N04, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013623371.10.0PREDICTED: B3 domain-containing transcription factor NGA1-like
SwissprotO827991e-163NGA1_ARATH; B3 domain-containing transcription factor NGA1
TrEMBLA0A0D3B7180.0A0A0D3B718_BRAOL; Uncharacterized protein
STRINGBra000434.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13072899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.11e-149B3 family protein