PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013622680.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 236aa    MW: 26844.7 Da    PI: 8.2385
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013622680.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3106.21.6e-3332141199
                     EEEE-..-HHHHTT-EE--HHH.HTT...........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                     f+k ltpsdv+k++rlv+pk++ae++           ++ +e+++ l++edesg+sW+++++y+++s++yvltkGW+++vk+++L++gD+v F++
  XP_013622680.1  32 FEKSLTPSDVGKLNRLVIPKQHAEKYlplnngggeltSETTEKGMLLSFEDESGKSWKFRYSYWNSSQSYVLTKGWSKYVKDKHLDAGDVVFFQR 126
                     99******************************99999777889***************************************************6 PP

                     -SS.SEE..EEEEE-S CS
              B3  85 dgr.sefelvvkvfrk 99 
                     + r +  +l+++++r+
  XP_013622680.1 127 H-RfDFHRLFIGWRRR 141
                     5.44888899999987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.7E-3924151IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-3128142IPR015300DNA-binding pseudobarrel domain
CDDcd100175.92E-3031132No hitNo description
PfamPF023621.6E-3032141IPR003340B3 DNA binding domain
SMARTSM010199.0E-2532142IPR003340B3 DNA binding domain
PROSITE profilePS5086313.78932142IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MLGNHYSRDI HHNTLSLHSH QNDTASHKES LFEKSLTPSD VGKLNRLVIP KQHAEKYLPL  60
NNGGGELTSE TTEKGMLLSF EDESGKSWKF RYSYWNSSQS YVLTKGWSKY VKDKHLDAGD  120
VVFFQRHRFD FHRLFIGWRR RGEASSLSAV SQEARVNTTV YWSGLTTPYR QVQASTSSYP  180
NIHQEYSQYG AVAETPTVVA GSSRTVRLFG VNLECHGDVV ETPPCSDGYN GQHIYY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A6e-452914111117DNA-binding protein RAV1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013622680.11e-178PREDICTED: B3 domain-containing protein At3g11580-like
RefseqXP_013644761.11e-178PREDICTED: B3 domain-containing protein At3g11580-like
SwissprotQ8RYD31e-125Y3158_ARATH; B3 domain-containing protein At3g11580
TrEMBLA0A0D3BAS01e-178A0A0D3BAS0_BRAOL; Uncharacterized protein
STRINGBra001411.1-P1e-173(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122028100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11580.11e-126B3 family protein