PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013621213.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 265aa    MW: 30135.4 Da    PI: 7.5413
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013621213.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3101.93.6e-3232140197
                     EEEE-..-HHHHTT-EE--HHH.HTT............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                     f+k ltpsdv+k++rlv+pk++ae+h             + +e+++ lt+edesg+ W+++++y+++s++yvltkGW+++vk+++L +gD+v F+
  XP_013621213.1  32 FEKSLTPSDVGKLNRLVIPKQHAEKHfplnnaaddvaaAETTEKGMLLTFEDESGKCWKFRYSYWNSSQSYVLTKGWSRYVKDKQLHAGDVVFFQ 126
                     99*******************************9999977788**************************************************** PP

                     E-SSSEE..EEEEE CS
              B3  84 ldgrsefelvvkvf 97 
                     +++ +  + +++++
  XP_013621213.1 127 RHRFDLHRVFIGWR 140
                     54325555566665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.3E-4126150IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.8E-3229144IPR015300DNA-binding pseudobarrel domain
CDDcd100171.16E-2831136No hitNo description
PROSITE profilePS5086313.22532141IPR003340B3 DNA binding domain
PfamPF023622.7E-2932141IPR003340B3 DNA binding domain
SMARTSM010191.1E-2332143IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MSGNHYSRDI HHNTPSLHHH QNDAVVDREY LFEKSLTPSD VGKLNRLVIP KQHAEKHFPL  60
NNAADDVAAA ETTEKGMLLT FEDESGKCWK FRYSYWNSSQ SYVLTKGWSR YVKDKQLHAG  120
DVVFFQRHRF DLHRVFIGWR KRGEVSSPSA ISVVSQDARV NTTAYWSNGL TTPYRQVHAS  180
TSSYPNIHQE YSHYGAVAET PTVVTGSSRT VRLFGVNLEC HGDVVEPPPC PDGYNGQHFY  240
YYSTPHPMNI SFAGEAMEQV GDRRG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A3e-462915011129DNA-binding protein RAV1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013621213.10.0PREDICTED: B3 domain-containing protein At3g11580 isoform X2
SwissprotQ8RYD31e-145Y3158_ARATH; B3 domain-containing protein At3g11580
TrEMBLM4FIU40.0M4FIU4_BRARP; Uncharacterized protein
STRINGBra041023.1-P0.0(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11580.11e-141B3 family protein