PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013620328.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family TCP
Protein Properties Length: 371aa    MW: 38833 Da    PI: 9.3753
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013620328.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP124.79.9e-39531832106
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec........eaesssssas..... 83 
                     +++k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+p i++ tgt++++a+++                ++     
  XP_013620328.1  53 PAAKKPSKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPVIIASTGTGTIPANFStlnatlrgG-------GGstifa 140
                     5789************************************************************88888776433223221.......1122221 PP

             TCP  84 ..nsssg....................kaaksaa.kskksqksaas 106
                       +   +                    +++++++  s  + +++a+
  XP_013620328.1 141 qsS---KsspfhstgmslyednngtngSSSSASKlLSAATAAQNAA 183
                     111...1223444444444444444442222222244444444444 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.2E-3359159IPR005333Transcription factor, TCP
PROSITE profilePS5136926.72359113IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MDQNSHDRPT AEAGLQLNST ENPSPGRSVP FAGGATSSST STSSGTALAV VKPAAKKPSK  60
DRHTKVDGRG RRIRMPALCA ARVFQLTREL GHKSDGETIE WLLQQAEPVI IASTGTGTIP  120
ANFSTLNATL RGGGGSTIFA QSSKSSPFHS TGMSLYEDNN GTNGSSSSAS KLLSAATAAQ  180
NAAVFGFHHQ GYPPIMSAER NQPTLGKPYR EDYFKESEPS GSSQKPGQFQ EQEMGPGPGM  240
GRGTANVVPQ PMWAVAPGTT NGGSAFWMLP MSGSGGREQM QQQPGHQMWA FNQGSYPVGT  300
GRVVTAPMGS MMLGGQQLGL GVAEGNMAAA MRGSRGGGGD GLAMTLDQHQ HQHHQQHQEP  360
NQSQASGDDK K
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00228DAPTransfer from AT1G72010Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013620328.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013620328.10.0PREDICTED: transcription factor TCP22-like
SwissprotQ9C7G41e-178TCP22_ARATH; Transcription factor TCP22
TrEMBLA0A0D3APY10.0A0A0D3APY1_BRAOL; Uncharacterized protein
STRINGBo2g075210.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM70532441
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72010.11e-136TCP family protein
Publications ? help Back to Top
  1. Wu JF, et al.
    LWD-TCP complex activates the morning gene CCA1 in Arabidopsis.
    Nat Commun, 2016. 7: p. 13181
    [PMID:27734958]
  2. Dong H, et al.
    Ubiquitylation activates a peptidase that promotes cleavage and destabilization of its activating E3 ligases and diverse growth regulatory proteins to limit cell proliferation in Arabidopsis.
    Genes Dev., 2017. 31(2): p. 197-208
    [PMID:28167503]