PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013619870.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family M-type_MADS
Protein Properties Length: 108aa    MW: 12296.2 Da    PI: 4.6937
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013619870.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF24.92.5e-081222142
                    HHHHHHHHHHHT-EEEEEEE-T CS
          SRF-TF 21 lKKAeELSvLCdaevaviifss 42
                    +KK +ELS+LC+++++ ii+s+
  XP_013619870.1  1 MKKLNELSTLCGINACAIIYSP 22
                    8********************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF003191.6E-6123IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.27E-13167IPR002100Transcription factor, MADS-box
CDDcd002662.24E-19157No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 108 aa     Download sequence    Send to blast
MKKLNELSTL CGINACAIIY SPYDSNPEVW PSNSGVQRII SEFRTLPEMD QNKKMVDQET  60
FLKQRIAKAS DNLKKQRKDI LEMEMTEVMF QCLIGTIGML ASESESES
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013619870.19e-76PREDICTED: agamous-like MADS-box protein AGL80
SwissprotQ9FJK31e-55AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLA0A078H7X36e-64A0A078H7X3_BRANA; BnaC02g26190D protein
STRINGBra018490.1-P2e-61(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7028415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G27810.16e-62M-type_MADS family protein