PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013619496.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family TCP
Protein Properties Length: 346aa    MW: 39407.7 Da    PI: 5.0567
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013619496.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP114.41.6e-35842192125
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...ssssasec...eaesssssasnsssg.. 88 
                     a+kkdrhski T++g+RdRRvRls+ +a++fFdLqd+LGfdk+s+t++WLl+++ + i el++    +   +++    ++  ++++++ ++ +  
  XP_013619496.1  84 AVKKDRHSKIDTAQGLRDRRVRLSIGVARQFFDLQDMLGFDKASETLDWLLKKSRRGINELVQEkklN---NKDEdfrNNRGDVEEDEDDG-Dks 174
                     89**************************************************************5552...32222222222222222111.134 PP

             TCP  89 .......kaaksaa.kskksqksaasalnlakesrakarararer 125
                            +++++   + kk++ks+ s   l+++ r k+++  re 
  XP_013619496.1 175 fvygsspDSCEEVVyEVKKTEKSNISSKGLMDKARGKSKQITREM 219
                     566666666666665666666666666666666666666666654 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.1E-3485217IPR005333Transcription factor, TCP
PROSITE profilePS5136933.1186144IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MSSSNNDYNN GNSGVYPLSL YLSSLPGHQG IIRNPYNHQS TASLGQMVSA VPESLIDYMS  60
FNSNSAVNQK GYEIPEVSRE IKKAVKKDRH SKIDTAQGLR DRRVRLSIGV ARQFFDLQDM  120
LGFDKASETL DWLLKKSRRG INELVQEKKL NNKDEDFRNN RGDVEEDEDD GDKSFVYGSS  180
PDSCEEVVYE VKKTEKSNIS SKGLMDKARG KSKQITREMT YDHPEAVSEI TQTEIMDPFK  240
MSIIFNEGDD MTHSFYKEAI QEFDNQECIL TKTNVNLPTD MDRSYNQHYG TCMSKNQGSS  300
SNYNTILPQN LDYGYDQNPF MDQPFCAVTN RNFPRGKVWV QDSSLA
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed transiently in early stages of floral meristems development but continuously in axillary shoot meristems, specifically in the dorsal part (adaxial). {ECO:0000269|PubMed:11470410}.
UniprotTISSUE SPECIFICITY: Axillary shoot and floral meristems. {ECO:0000269|PubMed:11470410}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in petal morphogenesis. {ECO:0000269|PubMed:17940055}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00215DAPTransfer from AT1G67260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013619496.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892000.0AC189200.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB005J17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013619496.10.0PREDICTED: transcription factor TCP1-like
SwissprotQ9FYG71e-159TCP1_ARATH; Transcription factor TCP1
TrEMBLA0A0D3ANK90.0A0A0D3ANK9_BRAOL; Uncharacterized protein
STRINGBo2g055640.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67332744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67260.11e-149TCP family protein
Publications ? help Back to Top
  1. Mazur MJ, et al.
    Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci.
    Front Plant Sci, 2017. 8: p. 2043
    [PMID:29250092]