PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013619395.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 291aa    MW: 33098.2 Da    PI: 4.4863
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013619395.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.65.3e-1415101798
                     .-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3   7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                     ++dv+ s+rlvlp ++  ++ ++++ ++t +l+ ++g+ W vk     ++++ + +++GW+ F  +n+  +gDf+ F++dg+++f  +v++fr
  XP_013619395.1  15 SKDVSLSQRLVLPSDYR-QY-YPTPLPQTAVLRKPEGNFWAVKW--GISPEEeISFGDGWSTFIAENDPLDGDFLQFSYDGSRSF--MVSIFR 101
                     6799999********96.55.3566999****************..77777779*************************998888..****98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.43E-165101IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.6E-167101IPR015300DNA-binding pseudobarrel domain
CDDcd100171.04E-127101No hitNo description
SMARTSM010193.9E-119103IPR003340B3 DNA binding domain
PROSITE profilePS5086313.0849103IPR003340B3 DNA binding domain
PfamPF023623.0E-1210102IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.7E-4195278IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.85E-5195278IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MVFTPYPDFL IIYNSKDVSL SQRLVLPSDY RQYYPTPLPQ TAVLRKPEGN FWAVKWGISP  60
EEEISFGDGW STFIAENDPL DGDFLQFSYD GSRSFMVSIF RGGLPVKPKA PVTIQDISDD  120
DDEDKTAGDD GNEKKEEDYD QNMIISLSLG SSDEEYDADK TVCEVNKAHR TLERGSSSQR  180
IRAQSIGDPE MYLDDPKNPC FIATSSSCRR MLVIAMQVIK DYDLKFDGTI KFIDGFGELE  240
GKIGNWKDRV VVYPWQEIYQ RNHAKPGDVI ICEILREGDV VRSIKAHFVK K
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013619395.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013619395.10.0PREDICTED: B3 domain-containing protein At5g57720
SwissprotQ9FHH11e-110Y5772_ARATH; B3 domain-containing protein At5g57720
TrEMBLA0A0D3ALD80.0A0A0D3ALD8_BRAOL; Uncharacterized protein
STRINGBo2g029120.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM137971723
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57720.11e-104B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]