PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013618051.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family TCP
Protein Properties Length: 230aa    MW: 24924.2 Da    PI: 11.1222
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013618051.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP125.65.4e-39351893117
             TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg......... 88 
                     +kk + +++hTkv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+q++p+i+ +tgt++++as++++++   s+s ++++         
  XP_013618051.1  35 VKKPPAKDRHTKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQSEPSIITATGTGTTPASFSTTSTCTISSSLDHKPllgsspfil 129
                     79*************************************************************99999888433333333333333556778888 PP

             TCP  89 ................................kaaksaa.kskksqksaasalnlakesrak 117
                                                     + a+ ++  ++++q++aa   ++ +++r++
  XP_013618051.1 130 gkrvregsrgaipagswsvparpefgqvlsfaAGAPHEMfLQQHQQQQAA--AHFVHQQRQQ 189
                     88888889999999999999999999999987444444435555555555..5555555544 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.5E-3240184IPR005333Transcription factor, TCP
PROSITE profilePS5136927.4584094IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MFNTTNGVMI SNGDILERQR QKQQQQQPSE GALVVKKPPA KDRHTKVDGR GRRIRMPIIC  60
AARVFQLTRE LGHKSDGQTI EWLLRQSEPS IITATGTGTT PASFSTTSTC TISSSLDHKP  120
LLGSSPFILG KRVREGSRGA IPAGSWSVPA RPEFGQVLSF AAGAPHEMFL QQHQQQQAAA  180
HFVHQQRQQQ GAIGEASAAR VGNYLPGHLN LLASLSAGAP GSGRREYCPR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013618051.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013618051.11e-169PREDICTED: transcription factor TCP7-like
RefseqXP_013675372.11e-169transcription factor TCP7
SwissprotQ9FMX26e-96TCP7_ARATH; Transcription factor TCP7
TrEMBLA0A078HTY11e-168A0A078HTY1_BRANA; BnaC02g41680D protein
TrEMBLA0A0D3AY141e-168A0A0D3AY14_BRAOL; Uncharacterized protein
TrEMBLA0A3P6D7S51e-168A0A3P6D7S5_BRAOL; Uncharacterized protein
STRINGBo2g160970.11e-168(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17822685
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23280.11e-72TCP family protein