PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013618007.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 323aa    MW: 36277.1 Da    PI: 4.5087
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013618007.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2591.1e-1878128155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     + ++GVr++  +g+WvAeIr+p   + r  r +lg+f taeeAa a+++a++ ++g
  XP_013618007.1  78 CSFRGVRQRI-WGKWVAEIREP---N-RgSRLWLGTFPTAEEAALAYDEAARVMYG 128
                     579****998.**********8...3.35**********************99887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.56E-3278136No hitNo description
PfamPF008472.6E-1378128IPR001471AP2/ERF domain
SMARTSM003802.8E-3979142IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-3179137IPR001471AP2/ERF domain
PROSITE profilePS5103222.02379136IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-2180137IPR016177DNA-binding domain
PRINTSPR003676.6E-108091IPR001471AP2/ERF domain
PRINTSPR003676.6E-10102118IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0010224Biological Processresponse to UV-B
GO:0010286Biological Processheat acclimation
GO:0042542Biological Processresponse to hydrogen peroxide
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MAVYDHSGDT NSTQLDTSRK RKARSRRDGT TVAERLQLWK DYNYNIEEAS SPKKRRVPAK  60
GSKKGCMKGK GGPENSQCSF RGVRQRIWGK WVAEIREPNR GSRLWLGTFP TAEEAALAYD  120
EAARVMYGPL ARLNFPQKSV SDVMSTSSQS EVCTAGTIGR VHVKTEDGDC DSEASPLEEM  180
KKEVKVDANA SVPSSDWLSE FEDKYWSQVL EEKEKHKKQE IAVETCQEQP ESLSVADYGW  240
PEDLDQSQWD SSEMFDVSEL LGDLNGDIFT DQSQYLEDNV ACGLSETEKQ QVGLYPSYGL  300
PPLELGAQDG NEFFDMSFSD LQK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-1880136360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12027RKARSRRD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1896311e-178AC189631.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS003K07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013618007.10.0PREDICTED: dehydration-responsive element-binding protein 2A-like
RefseqXP_013618008.10.0PREDICTED: dehydration-responsive element-binding protein 2A-like
SwissprotO821321e-134DRE2A_ARATH; Dehydration-responsive element-binding protein 2A
TrEMBLA0A0D3AHW20.0A0A0D3AHW2_BRAOL; Uncharacterized protein
STRINGBra028759.1-P1e-153(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28741765
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05410.11e-118DRE-binding protein 2A