PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013616238.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 233aa    MW: 25949.9 Da    PI: 6.5536
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013616238.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.34.5e-19123173255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr+++ +g+++AeIrdp +ng  +r++lg+f tae+Aa a+++a+ +++g
  XP_013616238.1 123 HYRGVRQRP-WGKFAAEIRDPAKNG--ARVWLGTFETAEDAAFAYDRAAFRMRG 173
                     8********.***********9987..*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.49E-31122181No hitNo description
Gene3DG3DSA:3.30.730.103.7E-32122181IPR001471AP2/ERF domain
SuperFamilySSF541712.09E-23123183IPR016177DNA-binding domain
PfamPF008471.1E-12123173IPR001471AP2/ERF domain
PROSITE profilePS5103224.171123181IPR001471AP2/ERF domain
SMARTSM003807.4E-40123187IPR001471AP2/ERF domain
PRINTSPR003677.8E-11124135IPR001471AP2/ERF domain
PRINTSPR003677.8E-11147163IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0009864Biological Processinduced systemic resistance, jasmonic acid mediated signaling pathway
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051301Biological Processcell division
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MMYGQSEVES DYALLESIRR HLLGGEAELR FAESIPSSCF TESWGDLPLK ENDSEDMLVY  60
GLLNDPYDTS SPSSDLSCIT EFVDLETSSK RPSDSPVAKA EPAESFAAAT VEKQKAATAK  120
GKHYRGVRQR PWGKFAAEIR DPAKNGARVW LGTFETAEDA AFAYDRAAFR MRGSRALLNF  180
PLRVNSGEPD PVRITSKRSY TSSSSSSSEN RKLKRRRKTE NVPSEFQVKC EVV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3gcc_A6e-45119188170ATERF1
2gcc_A6e-45119188170ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1209216NRKLKRRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00548DAPTransfer from AT5G47220Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1834950.0AC183495.1 Brassica oleracea Contig A, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013616238.11e-172PREDICTED: ethylene-responsive transcription factor 2-like
SwissprotO803381e-108EF101_ARATH; Ethylene-responsive transcription factor 2
TrEMBLA0A0D3AUX61e-172A0A0D3AUX6_BRAOL; Uncharacterized protein
STRINGBra022115.1-P1e-154(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47220.19e-81ethylene responsive element binding factor 2