PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013615578.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family M-type_MADS
Protein Properties Length: 86aa    MW: 9675.18 Da    PI: 10.3562
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013615578.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF46.74.2e-15945137
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevav 37
                    k ienks rq tfskRr+g++ KA  LSvLC+  vav
  XP_013615578.1  9 KLIENKSSRQDTFSKRRTGLIEKARQLSVLCESSVAV 45
                    569********************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.4E-17153IPR002100Transcription factor, MADS-box
PROSITE profilePS5006621.572151IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.7E-18161IPR002100Transcription factor, MADS-box
PRINTSPR004045.6E-13323IPR002100Transcription factor, MADS-box
PfamPF003197.5E-151145IPR002100Transcription factor, MADS-box
PRINTSPR004045.6E-132338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 86 aa     Download sequence    Send to blast
MGRRKVEIKL IENKSSRQDT FSKRRTGLIE KARQLSVLCE SSVAVPALEN STTPLPVTMY  60
SIVMHFRRIA ERLIGVNGDT DQESLA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1667414e-67AC166741.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH080C09, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013615578.19e-58PREDICTED: agamous-like MADS-box protein AGL31 isoform X2
SwissprotQ9FPN72e-20AGL31_ARATH; Agamous-like MADS-box protein AGL31
TrEMBLA0A0D2ZWV15e-55A0A0D2ZWV1_BRAOL; Uncharacterized protein
STRINGBra031888.1-P6e-21(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65060.26e-23MIKC_MADS family protein