PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013614625.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 245aa    MW: 28478.4 Da    PI: 6.6479
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013614625.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3101.83.8e-3237142199
                     EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                     f+k ltpsdv+k++rlv+pk++ae++        + + e++  l +ede+g+ W+++++y+++s++yvltkGW+++vk+++L++gD+v+F++++ 
  XP_013614625.1  37 FEKPLTPSDVGKLNRLVIPKQHAERYfplaaaavDAV-EKGLLLCFEDEEGKPWRFRYSYWNSSQSYVLTKGWSRYVKEKQLDAGDVVLFHRHRV 130
                     99*****************************997555.57789************************************************8777 PP

                     SEE..EEEEE-S CS
              B3  88 sefelvvkvfrk 99 
                     ++++++++++r+
  XP_013614625.1 131 DGGRFFIGWRRR 142
                     9*********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.5E-4030150IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.83E-3034142IPR015300DNA-binding pseudobarrel domain
CDDcd100171.20E-2736141No hitNo description
SMARTSM010198.5E-2437143IPR003340B3 DNA binding domain
PROSITE profilePS5086314.07137143IPR003340B3 DNA binding domain
PfamPF023622.0E-2937142IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0080167Biological Processresponse to karrikin
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MSINQYSSEF HYHSLMWQQQ QQHHQQNEVV EEKEALFEKP LTPSDVGKLN RLVIPKQHAE  60
RYFPLAAAAV DAVEKGLLLC FEDEEGKPWR FRYSYWNSSQ SYVLTKGWSR YVKEKQLDAG  120
DVVLFHRHRV DGGRFFIGWR RRGDSSSSSD SYRHLQSNAS LQYYPHAGAQ AVENQRGNSK  180
TLRLFGVNME CQIDSDWSEP STPDGFTTYS TNHDQFPIYP EHYPPPCYMD VSFTGDVHQT  240
RSQQG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A5e-473414511120DNA-binding protein RAV1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1175870.0AK117587.1 Arabidopsis thaliana At2g36080 mRNA for putative RAV2-like DNA binding protein, complete cds, clone: RAFL17-23-G02.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013614625.10.0PREDICTED: B3 domain-containing protein At2g36080
SwissprotQ8GYJ21e-147Y2608_ARATH; B3 domain-containing protein At2g36080
TrEMBLA0A0D2ZTH00.0A0A0D2ZTH0_BRAOL; Uncharacterized protein
STRINGBra017262.1-P1e-164(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122028100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36080.11e-135B3 family protein