PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013610889.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family M-type_MADS
Protein Properties Length: 198aa    MW: 21877.5 Da    PI: 4.6573
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013610889.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF37.43.3e-121249238
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHH.T-EEEEE CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLC.daevavi 38
                     ie k+ ++v f+kRrng++ KA EL+ L   a++a++
  XP_013610889.1 12 EIEKKTVKSVAFTKRRNGLFRKAAELCLLSsSAQIAIL 49
                    79***************************725788876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.6E-9364IPR002100Transcription factor, MADS-box
PROSITE profilePS5006614.199351IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-8525IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.35E-14578IPR002100Transcription factor, MADS-box
PfamPF003191.2E-101356IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-82540IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MGGTKRKIKI EEIEKKTVKS VAFTKRRNGL FRKAAELCLL SSSAQIAILA TPPSTNSHAA  60
FYSFGHSSVD HVVSSLLNDT CPLPTEQENK SGLGFWWEDE GFERSENIDE LKEATDAVSR  120
MLNNLRLRLD ALKSNQSGGA LVIHQEEVLP ICDTETNNNE EMTNQITRLE GASGSLVEYV  180
EDSLPNDGFF GDVKIDTL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013610889.11e-146PREDICTED: agamous-like MADS-box protein AGL97
SwissprotQ9C6336e-43AGL97_ARATH; Agamous-like MADS-box protein AGL97
TrEMBLA0A0D3E5671e-146A0A0D3E567_BRAOL; Uncharacterized protein
STRINGBra040965.1-P1e-127(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45417145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G60920.12e-67AGAMOUS-like 55