PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013610796.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 259aa    MW: 28646.4 Da    PI: 4.4031
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013610796.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.80.000726587123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    + C  C+k++s++ +L  H+++H
  XP_013610796.1 65 FICRFCNKRCSSSQSLGGHMNSH 87
                    89*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.34E-55997No hitNo description
PROSITE profilePS501578.8296592IPR007087Zinc finger, C2H2
PROSITE patternPS0002806787IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MSSASSSLAQ LKTCNDINVA VEESKETATE NNNPGLGSDS QEVVTERRSE NPSLGSGAVP  60
TGNGFICRFC NKRCSSSQSL GGHMNSHKRE LQWERKQKEN EQQFHRQWIL SQYSQGALSN  120
DNNLGNTSEP FKRICTGLYP SFNSGLMDMN MTVVPRMAPT GFFSGNTFTN GSFSGGLEPI  180
PSYNNYPPML PRNVPPFPPH RTTNLPSYWY PQENVLNEED VILKLGNDNI VEIDDDDDDD  240
AVDQPEEGPS KSWGADLSL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013610796.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013610796.10.0PREDICTED: zinc finger protein STAMENLESS 1-like
TrEMBLA0A0D3E1510.0A0A0D3E151_BRAOL; Uncharacterized protein
STRINGBo9g010560.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63631842
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G27880.18e-68C2H2 family protein