PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013610714.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family M-type_MADS
Protein Properties Length: 279aa    MW: 32057.1 Da    PI: 9.298
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013610714.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF71.47.8e-231662349
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                     en+sn qvtfskRr g++KKA+EL +LC+a++av++fs+ gk+y +
  XP_013610714.1 16 MENESNLQVTFSKRRSGLFKKASELNTLCGADIAVVVFSPGGKVYSF 62
                    79*******************************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006625.02666IPR002100Transcription factor, MADS-box
SMARTSM004322.9E-31665IPR002100Transcription factor, MADS-box
CDDcd002654.13E-34776No hitNo description
SuperFamilySSF554551.57E-27785IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-19828IPR002100Transcription factor, MADS-box
PfamPF003197.3E-261562IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-192843IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-194364IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MAKKSKGRQR ITMAKMENES NLQVTFSKRR SGLFKKASEL NTLCGADIAV VVFSPGGKVY  60
SFGHPNVENV LNRFKNINQP PLNQNNNMRF NEARPNDAIR VMNDFLTQVM NDLELAKKKN  120
EELKKIRKNS KMPVNWWEDP VEELDLAHAK EFKGLLEKLK SYVTDEASKH FQAIFPQPNF  180
YGGSSSGAPF RDGGYINPNL DPSERRMFNV NAYYNQNMYP PNYPLPYGNN NYAGGFVPEY  240
SLNYMHGFNQ YRNQNQNLNF KEEGISENEC HQDGLPPHL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1egw_D1e-13780174MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POL
1egw_C1e-13780174MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POL
1egw_B1e-13780174MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POL
1egw_A1e-13780174MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POL
3p57_J1e-13787181Myocyte-specific enhancer factor 2A
3p57_I1e-13787181Myocyte-specific enhancer factor 2A
3p57_D1e-13787181Myocyte-specific enhancer factor 2A
3p57_C1e-13787181Myocyte-specific enhancer factor 2A
3p57_B1e-13787181Myocyte-specific enhancer factor 2A
3p57_A1e-13787181Myocyte-specific enhancer factor 2A
3kov_J1e-13787181Myocyte-specific enhancer factor 2A
3kov_I1e-13787181Myocyte-specific enhancer factor 2A
3kov_B1e-13787181Myocyte-specific enhancer factor 2A
3kov_A1e-13787181Myocyte-specific enhancer factor 2A
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013610714.10.0PREDICTED: agamous-like MADS-box protein AGL62
SwissprotQ9FKK25e-95AGL62_ARATH; Agamous-like MADS-box protein AGL62
TrEMBLA0A078JBW00.0A0A078JBW0_BRANA; BnaCnng38710D protein
TrEMBLA0A0D3ED430.0A0A0D3ED43_BRAOL; Uncharacterized protein
STRINGBra002480.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8628390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.11e-69AGAMOUS-like 62