PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013609500.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 287aa    MW: 32434.6 Da    PI: 6.7032
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013609500.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3106.51.4e-3344152199
                     EEEE-..-HHHHTT-EE--HHH.HTT..........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                     f+k+ltpsdv+k++rlv+pk++ae++          + ++e+++ l++ede g+ W+++++y+++s++yvltkGW++Fvk+++L+ gD+v F+++
  XP_013609500.1  44 FEKTLTPSDVGKLNRLVIPKQHAEKYfplnaisnnaDASTEKGMLLSFEDELGKCWRFRYSYWNSSQSYVLTKGWSRFVKDKQLDPGDVVFFQRQ 138
                     99********************************9988889****************************************************99 PP

                     SSSEE..EEEEE-S CS
              B3  86 grsefelvvkvfrk 99 
                     +++ ++l+++++r+
  XP_013609500.1 139 RSDPRRLFIGWRRR 152
                     889999******97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.1E-4038159IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.02E-3139152IPR015300DNA-binding pseudobarrel domain
CDDcd100174.60E-2843141No hitNo description
SMARTSM010193.8E-2444153IPR003340B3 DNA binding domain
PROSITE profilePS5086314.08544153IPR003340B3 DNA binding domain
PfamPF023626.7E-3144152IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010073Biological Processmeristem maintenance
GO:0010358Biological Processleaf shaping
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MSVNHYSTDH HHNHTLFWQQ LHTTDATETT TATWLNQDQK ESLFEKTLTP SDVGKLNRLV  60
IPKQHAEKYF PLNAISNNAD ASTEKGMLLS FEDELGKCWR FRYSYWNSSQ SYVLTKGWSR  120
FVKDKQLDPG DVVFFQRQRS DPRRLFIGWR RRGQGSSSAV ANPTSYSSSM VDAPPYLQVH  180
ASSNYSNPPS HSEYSHYGAA VATASETHSI PSSSAVGSSR TVRLFGVNLE CQMDEDDGDD  240
SVAAPNATEC PDGYYGQNMY YYYTPHPHNM NIAFTGDTMK QLGDRRG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A1e-464116511129DNA-binding protein RAV1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013680961.10.0PREDICTED: B3 domain-containing protein At5g06250-like isoform X1
RefseqXP_013609500.10.0PREDICTED: B3 domain-containing protein At5g06250
SwissprotQ9FNI31e-138Y5625_ARATH; B3 domain-containing protein At5g06250
TrEMBLA0A0D3EHF20.0A0A0D3EHF2_BRAOL; Uncharacterized protein
STRINGBra005886.1-P1e-142(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122028100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06250.21e-138B3 family protein