PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013607507.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 269aa    MW: 29931.9 Da    PI: 4.2327
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013607507.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.60.000897092123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    + C  C+k++s++ +L  H++ H
  XP_013607507.1 70 FICRFCNKRCSSSQSLGGHMNAH 92
                    89******************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.25E-564112No hitNo description
PROSITE profilePS501578.8087097IPR007087Zinc finger, C2H2
PROSITE patternPS0002807292IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MENQVMSSAS SSLAQLEKCN DINVAVEESK ETATENNNPG LGSDSQEVVS ERRSENPSFG  60
SGAVPTGNGF ICRFCNKRCS SSQSLGGHMN AHKRELQWER KRKEMEQMEQ EFHFQWMLSQ  120
YSQGDLSNDN NLGNTSEPFK RICTGLYPSF NSGLMDMNMT VVPRMAPTGF FSGNTFTNGS  180
FSGGLEPMPS YNNYPPMLPR NVPPFPPHRT TNLPSYWYPQ ENVLNEEDVI LKLGNDNIVE  240
IDDDDDADAD AVDQPEEGTS KSWGADLSL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013607507.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013607507.10.0PREDICTED: uncharacterized protein LOC106314121
TrEMBLA0A0D3E1540.0A0A0D3E154_BRAOL; Uncharacterized protein
STRINGBo9g010590.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63631842
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G27880.13e-68C2H2 family protein