PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013606794.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family TCP
Protein Properties Length: 236aa    MW: 24818.6 Da    PI: 8.546
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013606794.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP124.11.5e-38271902120
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssas...nsssg..... 88 
                     a+kk + +++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ ++s s s+        +     
  XP_013606794.1  27 AVKKPPAKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFS-TASLSTSSPftlG---Krvvra 117
                     79**************************************************************99999666.2233332222220...134444 PP

             TCP  89 ......................................................kaaksaakskksqksaasalnlakesrakara 120
                                                                           +           q++a+  l + +++++++ a
  XP_013606794.1 118 eegesgagggelsvghtmgasggggfwavparndfgqvwsfaagappemlftqqQ-----------QQPAT--LFVRHQQQQQQEA 190
                     4445566778888888888888889999999999999998875333333333221...........22222..2222222222222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036344.9E-3333188IPR005333Transcription factor, TCP
PROSITE profilePS5136927.8923387IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042752Biological Processregulation of circadian rhythm
GO:0043433Biological Processnegative regulation of sequence-specific DNA binding transcription factor activity
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MSNDEVTVAN GVIVEHTSAT NKGTLNAVKK PPAKDRHSKV DGRGRRIRMP IICAARVFQL  60
TRELGHKSDG QTIEWLLRQA EPSIIAATGT GTTPASFSTA SLSTSSPFTL GKRVVRAEEG  120
ESGAGGGELS VGHTMGASGG GGFWAVPARN DFGQVWSFAA GAPPEMLFTQ QQQQPATLFV  180
RHQQQQQQEA SAAAAMGEAS AARVGNYLPG HHLNLLASLS GGNTGSGRRE EEDDSR
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in leaves, roots, and stems. {ECO:0000269|PubMed:19286557}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the regulation of the circadian clock. Acts as a repressor of CCA1 by binding to its promoter. No binding to the LHY promoter. {ECO:0000269|PubMed:19286557}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00499DAPTransfer from AT5G08330Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013606794.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893320.0AC189332.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB038E05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013606794.11e-173PREDICTED: transcription factor TCP21-like
SwissprotQ9FTA21e-114TCP21_ARATH; Transcription factor TCP21
TrEMBLA0A0D3EGV41e-172A0A0D3EGV4_BRAOL; Uncharacterized protein
TrEMBLA0A3P6ECX91e-172A0A3P6ECX9_BRAOL; Uncharacterized protein
STRINGBo9g174490.11e-172(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17822685
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08330.19e-88TCP family protein
Publications ? help Back to Top
  1. Wu JF, et al.
    LWD-TCP complex activates the morning gene CCA1 in Arabidopsis.
    Nat Commun, 2016. 7: p. 13181
    [PMID:27734958]
  2. Ng DW,Chen HH,Chen ZJ
    Heterologous protein-DNA interactions lead to biased allelic expression of circadian clock genes in interspecific hybrids.
    Sci Rep, 2017. 7: p. 45087
    [PMID:28345627]
  3. Lee CM, et al.
    Decoys Untangle Complicated Redundancy and Reveal Targets of Circadian Clock F-Box Proteins.
    Plant Physiol., 2018. 177(3): p. 1170-1186
    [PMID:29794020]