PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013606621.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 334aa    MW: 37076.9 Da    PI: 4.637
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013606621.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.59.5e-2077127155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     + ++GVr++  +g+WvAeIr+p   + r  r +lg+f tae+Aa+a+++a+k+++g
  XP_013606621.1  77 CSFRGVRQRT-WGKWVAEIREP---N-RgSRLWLGTFPTAEKAAAAYDEAAKAMYG 127
                     579****999.**********8...3.35************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.1E-1477127IPR001471AP2/ERF domain
CDDcd000181.97E-1877137No hitNo description
SMARTSM003809.1E-3878141IPR001471AP2/ERF domain
PROSITE profilePS5103221.91878135IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.7E-3178137IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-2179137IPR016177DNA-binding domain
PRINTSPR003678.3E-107990IPR001471AP2/ERF domain
PRINTSPR003678.3E-10101117IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MAVYDRSGEI NKTEFDTTKK RKSRSRRDGT TVADRIKMWK EYNDTVEESP SKKRRVPAKG  60
SKKGCMKGKG GPENGGCSFR GVRQRTWGKW VAEIREPNRG SRLWLGTFPT AEKAAAAYDE  120
AAKAMYGPLA RVNFPQSSSV SDVASTSSRS EVCTVEPPGV VRVKTEDVDC ESRPFFVDRV  180
ESDANAGEEE MKVDATGDIQ GKDWLSELEQ ECWTGLLEEK QKLKEQEIVA AGNFQRQPDS  240
LSVSDYGWPA DLYQNQWDSS EMFDVSELLG DLNGDIFTGS NQNQCLGDDV GGGLPEPEKQ  300
QLQSLGSDYG FPSLQHEAKD GSDFFDLSFL NAKN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-1679135360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12027RKSRSRRD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013606621.10.0PREDICTED: dehydration-responsive element-binding protein 2A
SwissprotO821321e-131DRE2A_ARATH; Dehydration-responsive element-binding protein 2A
TrEMBLA0A0D3EHL80.0A0A0D3EHL8_BRAOL; Uncharacterized protein
STRINGBra009112.1-P1e-170(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28741765
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05410.12e-95DRE-binding protein 2A