PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013606593.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family TCP
Protein Properties Length: 216aa    MW: 23119.8 Da    PI: 9.8674
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013606593.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP125.46.2e-39111763118
             TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasnsssg....... 88 
                     +kk + +++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++  +  +s   +s+ + +       
  XP_013606593.1  11 VKKPPAKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFStvS--ASLRGNSTTT-Tncslsss 102
                     79*************************************************************99999777331..2222222222.12456666 PP

             TCP  89 ............................................kaaksaakskksqksaasalnlak.esraka 118
                                                                 + a++++  +++q++aa  l +++ +++++a
  XP_013606593.1 103 ldhkpllgsspfilgkrvradedtpsgfwavparpefgqvwsfaAGATQEMFLQQQQQQAA-GLFVHHqQQQQQA 176
                     7778888999999999999999999999999999999999998644444544444444444.3444441333333 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136927.8921670IPR017887Transcription factor TCP subgroup
PfamPF036342.7E-3416174IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MSNNNDGALV VKKPPAKDRH SKVDGRGRRI RMPIICAARV FQLTRELGHK SDGQTIEWLL  60
RQAEPSIIAA TGTGTTPASF STVSASLRGN STTTTNCSLS SSLDHKPLLG SSPFILGKRV  120
RADEDTPSGF WAVPARPEFG QVWSFAAGAT QEMFLQQQQQ QAAGLFVHHQ QQQQQAAMGE  180
ASAARVGNYL PGHLNLLASL SSGAPGSGRG EDDDQR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013606593.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013606593.11e-159PREDICTED: transcription factor TCP7-like
SwissprotQ9FMX21e-104TCP7_ARATH; Transcription factor TCP7
TrEMBLA0A0D3E1M31e-157A0A0D3E1M3_BRAOL; Uncharacterized protein
STRINGBo9g014260.11e-158(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17822685
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23280.12e-76TCP family protein