PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013606001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GRAS
Protein Properties Length: 493aa    MW: 54815 Da    PI: 5.7495
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013606001.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS320.63.2e-981184861373
            GRAS   1 lvelLlecAeavssgdle..laqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalklfsevsPil 91 
                     lv+lL+++A+a    d++  l++ lLa+l+++ s ++ ++m+Rlaa+ft++L++   +   ++ ++  p ++ + ++ ++++ a+++++++sP++
  XP_013606001.1 118 LVHLLVAAADASIGADKTreLTRVLLAKLKDMTSTNDrTNMERLAAHFTNGLSKLHKE--ANVQRQYgPHQHPDVHDRVDVMLAFQMLQNMSPYI 210
                     689******997554433349***********6666659*************987777..666666625555555669999************** PP

            GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp..slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlv 182
                     +f++lta qaIleav+ e+r+Hi+D+di+ G+QWp+L+qaL sR+ gp   +lRiT+++++++g  s  +++e g+rL+ fAe++g pf+++   
  XP_013606001.1 211 NFGYLTATQAILEAVQYERRIHIVDYDITDGVQWPSLMQALVSRNTGPSaqHLRITALSRATNGkkSVAAVQEAGRRLTAFAESIGQPFSYHH-C 304
                     *********************************************765446*********999999999***********************9.7 PP

            GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerflealeyysalfdsleaklp 276
                       + +++++++L++ +gEa+++n+vl+l r+ +++ ++     ++L+  k+l+Pk+v++v++e+ + +++ Fl rf++ l+ +sa+fdslea+  
  XP_013606001.1 305 RMESDTFNPSSLKLVRGEAVVINCVLHLPRFSHQPPNSII---SFLSEAKTLNPKLVTLVHEEVGLvGNQGFLYRFMDLLHQFSAIFDSLEAG-- 394
                     889*****************************98888887...9**********************9**************************.. PP

            GRAS 277 reseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee.sgslvlgWkdrpLvsv 370
                         +r +vEr+++g++++++++       ++ e++++W  +l + GFkpv++s  + +qaklll+ ++ dgy vee  ++ lvlgWk+r+Lvs+
  XP_013606001.1 395 ---PARGFVERVIFGPWVSDWLTRIAIT--AEVESFASWPLWLATNGFKPVEVSFANRCQAKLLLSLFN-DGYGVEELgQNGLVLGWKSRRLVSA 483
                     ...9*******************99997..99*************************************.******98789999*********** PP

            GRAS 371 SaW 373
                     S+W
  XP_013606001.1 484 SFW 486
                     *** PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098545.24892467IPR005202Transcription factor GRAS
PfamPF035141.1E-95118486IPR005202Transcription factor GRAS
Gene3DG3DSA:1.25.40.807.6E-4194231No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    Send to blast
MHCPFFFIIS MTMNHPYDDF PNLLFSNNTA TATATSTSSC VEQHDGIISL DMDWDCDFHD  60
LIESMMSDKG ATTESPPVLP CYHGQEGISN SSSTGLSMAD ELDHDVEAEA DESKGLRLVH  120
LLVAAADASI GADKTRELTR VLLAKLKDMT STNDRTNMER LAAHFTNGLS KLHKEANVQR  180
QYGPHQHPDV HDRVDVMLAF QMLQNMSPYI NFGYLTATQA ILEAVQYERR IHIVDYDITD  240
GVQWPSLMQA LVSRNTGPSA QHLRITALSR ATNGKKSVAA VQEAGRRLTA FAESIGQPFS  300
YHHCRMESDT FNPSSLKLVR GEAVVINCVL HLPRFSHQPP NSIISFLSEA KTLNPKLVTL  360
VHEEVGLVGN QGFLYRFMDL LHQFSAIFDS LEAGPARGFV ERVIFGPWVS DWLTRIAITA  420
EVESFASWPL WLATNGFKPV EVSFANRCQA KLLLSLFNDG YGVEELGQNG LVLGWKSRRL  480
VSASFWASCE SSE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-4012948628377Protein SCARECROW
5b3h_D2e-4012948628377Protein SCARECROW
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, leaves and flowers. {ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013606001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX2425530.0JX242553.1 Brassica oleracea isolate BoNSP2 nodulation signaling pathway 2-like protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013606001.10.0PREDICTED: scarecrow-like protein 26
SwissprotQ9SUF50.0SCL26_ARATH; Scarecrow-like protein 26
TrEMBLA0A0D3EBE70.0A0A0D3EBE7_BRAOL; Uncharacterized protein
STRINGBo9g120770.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM99142736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.10.0GRAS family protein