PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013605983.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family TCP
Protein Properties Length: 392aa    MW: 41170.1 Da    PI: 6.5124
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013605983.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP133.71.7e-41502163135
             TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg........ 88 
                     + k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai ++tgt++++a+++  ++s +ss+s+ s++        
  XP_013605983.1  50 VTKRSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAIVAATGTGTIPANFSsLSVSLRSSGSTLSAPpsksvply 144
                     679*****************************************************************999888888888886666677778899 PP

             TCP  89 ...........................kaaksaakskksqksaasalnlakesrakarararertrekmriknk 135
                                                ++  +  +++++q++a++   ++ es +++r r+ ++++e+   k++
  XP_013605983.1 145 galglthhqyeeqggafgahtppllgfHHHLQ--QQHHQQAPAETIPGPDGESFSRKRYRSVDSSKEDGEGKQN 216
                     99999988888899999988887654422222..3334444444445555566666666666666665555544 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036344.5E-4154210IPR005333Transcription factor, TCP
PROSITE profilePS5136928.41155109IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001047Molecular Functioncore promoter binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MDLSDDGVAA RGGSRHLVDP SLSIVPRSTP QEDPTTSSTA AAAATTSGVV TKRSTKDRHT  60
KVDGRGRRIR MPALCAARVF QLTRELGHKS DGETIEWLLQ QAEPAIVAAT GTGTIPANFS  120
SLSVSLRSSG STLSAPPSKS VPLYGALGLT HHQYEEQGGA FGAHTPPLLG FHHHLQQQHH  180
QQAPAETIPG PDGESFSRKR YRSVDSSKED GEGKQNENKS LKESEPPAAA TGAPMWAVAP  240
TNRSAGGNTF WMLPVPTTTA GNQPAAMESS SNANRAHMWP FGGGGAGAGG GGATHFMAGT  300
GFSFPMDQYR GSPLQLGSFL AQPQQPNQNI GLSLPDSNLG VLAALNAAYP RGGNANAEQV  360
NNAVEHQEKQ QQQAQQSDQD DDSRDENSNS DG
Functional Description ? help Back to Top
Source Description
UniProtCan specifically bind site II elements in the promoter region of PP438/PNM1. {ECO:0000269|PubMed:21297037}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013605983.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013605983.10.0PREDICTED: transcription factor TCP8
SwissprotQ9C5181e-177TCP8_ARATH; Transcription factor TCP8
TrEMBLA0A0D3E5N00.0A0A0D3E5N0_BRAOL; Uncharacterized protein
STRINGBo9g052090.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM102182433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58100.11e-154TCP family protein
Publications ? help Back to Top
  1. Mazur MJ, et al.
    Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci.
    Front Plant Sci, 2017. 8: p. 2043
    [PMID:29250092]