PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013604087.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family M-type_MADS
Protein Properties Length: 206aa    MW: 23513.2 Da    PI: 9.7956
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013604087.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF69.92.4e-225199149
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    k i+++s+r+vtfskRr g++KKA ELSvL++a++av+ fs+ g++y +
  XP_013604087.1 51 KEIKEDSKRHVTFSKRRRGLFKKAAELSVLTGAKIAVVTFSKCGRIYSF 99
                    689********************************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006624.06743103IPR002100Transcription factor, MADS-box
SMARTSM004322.3E-2343102IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.63E-2244114IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-174565IPR002100Transcription factor, MADS-box
PfamPF003191.3E-215399IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-176580IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-1780101IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MEEVRETLPT TFLKPNEQLQ IPNVLVTQTK KELTKPRNPK TSRGRLKIEI KEIKEDSKRH  60
VTFSKRRRGL FKKAAELSVL TGAKIAVVTF SKCGRIYSFG HVDSLMDKYL RKIPVNLDVY  120
SGGDSAEEGG RPWWERPVES VPEEELEEYI MAMSVLRDKL GKKINDMGSI VPEWPINMMG  180
WKPQMDMQSM GDVTDGVTRC RLGQNG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mnm_A4e-1436100973PROTEIN (MCM1 TRANSCRIPTIONAL REGULATOR)
1mnm_B4e-1436100973PROTEIN (MCM1 TRANSCRIPTIONAL REGULATOR)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013604087.11e-152PREDICTED: agamous-like MADS-box protein AGL61
TrEMBLA0A0D3DWU61e-152A0A0D3DWU6_BRAOL; Uncharacterized protein
STRINGBra026674.1-P1e-140(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46972052
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17310.11e-72M-type_MADS family protein