PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013603749.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 171aa    MW: 19546.6 Da    PI: 5.1032
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013603749.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.25.5e-202068355
             AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    y+GVr++k +g+Wv+eIr+p   gk++r++lg++ tae+Aa+a++aa++ l+g
  XP_013603749.1 20 YRGVRRRK-WGKWVSEIREP---GKKTRIWLGSYETAEMAAAAYDAAALHLRG 68
                    9****998.**********8...557*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.2E-311977IPR001471AP2/ERF domain
PfamPF008471.8E-131968IPR001471AP2/ERF domain
PROSITE profilePS5103223.421976IPR001471AP2/ERF domain
SMARTSM003803.1E-351982IPR001471AP2/ERF domain
SuperFamilySSF541712.09E-222077IPR016177DNA-binding domain
CDDcd000184.77E-192078No hitNo description
PRINTSPR003672.4E-102031IPR001471AP2/ERF domain
PRINTSPR003672.4E-104258IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MENNHFDQRE ERLSVDQVSY RGVRRRKWGK WVSEIREPGK KTRIWLGSYE TAEMAAAAYD  60
AAALHLRGRG THLNFPELAD SFPRPESSSS EHVQAAAQEA SLMFKPGGST EPDIVSGQGL  120
SRVGLSPDQI QANNEFPLDS PRMGWMQDLE VNDYEELYRR YFGQCDRAEF F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-162081668ATERF1
3gcc_A2e-162081668ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013603749.11e-126PREDICTED: ethylene-responsive transcription factor ERF022-like
SwissprotQ9LQ285e-93ERF22_ARATH; Ethylene-responsive transcription factor ERF022
TrEMBLA0A078DR561e-126A0A078DR56_BRANA; BnaC08g07150D protein
TrEMBLA0A0D3DKN51e-126A0A0D3DKN5_BRAOL; Uncharacterized protein
STRINGscaffold_103754.12e-94(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33760.17e-93ERF family protein