PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013603574.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 144aa    MW: 16697 Da    PI: 8.1902
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013603574.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.83.5e-1727120198
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                     ffk++   d +++++  +p +f+++  ++   s  +++++++g sWevk+  + +++  y+ ++GW++Fv++n L +++ v+F+++g ++f  +v
  XP_013603574.1  27 FFKIFQGDDLSSESMRAFPYDFIRNVPQND-YSSNMVIRTQWGISWEVKV--SMNPRFyYMEKRGWNQFVNDNALGDKELVTFTHTGLMCF--NV 116
                     8999988899999999*******8885444.45589**************..999999566669********************9998999..88 PP

                     EEE- CS
              B3  95 kvfr 98 
                     k+++
  XP_013603574.1 117 KIYE 120
                     8876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.08E-1721122IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.3E-1723123IPR015300DNA-binding pseudobarrel domain
CDDcd100171.05E-1526119No hitNo description
PfamPF023621.6E-1527120IPR003340B3 DNA binding domain
PROSITE profilePS5086312.30827122IPR003340B3 DNA binding domain
SMARTSM010198.7E-1927122IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 144 aa     Download sequence    Send to blast
MMFPKEREIG SSSGLGQGEV DVKNLSFFKI FQGDDLSSES MRAFPYDFIR NVPQNDYSSN  60
MVIRTQWGIS WEVKVSMNPR FYYMEKRGWN QFVNDNALGD KELVTFTHTG LMCFNVKIYE  120
ENGKELVTPR RPRTMASLSK CSSF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013710617.11e-105PREDICTED: B3 domain-containing protein At3g17010-like
RefseqXP_013603574.11e-105PREDICTED: B3 domain-containing protein At3g17010-like
SwissprotQ9LSP62e-44Y3701_ARATH; B3 domain-containing protein At3g17010
TrEMBLA0A0D3DNY91e-100A0A0D3DNY9_BRAOL; Uncharacterized protein
STRINGBra018430.1-P1e-90(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56521135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G17010.11e-45B3 family protein