PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013603556.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GRAS
Protein Properties Length: 418aa    MW: 46950.7 Da    PI: 5.6244
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013603556.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS318.91.1e-97304152373
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalkl..fsevsPilk 92 
                     ++lLl+cA+a++s+d++l+++lL+ l+++aspdg +++qRl++ f++AL +r +++ ++l++++ ++  +++ ++++++++++l  f +++P+++
  XP_013603556.1  30 EQLLLHCATAIDSNDAALVHQLLWVLNNIASPDGdSSTQRLTSAFVRALLSRAVSKIPTLFSTFgNTVFQPPADEIHRFSVVELagFIDLTPWHR 124
                     79********************************779***************************877778888899999999999********** PP

            GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvl... 181
                     f++++aN+aIl aveg  +vHi+D+++++++Q p+L++a+a++ ++p  l++T+v+s++++    + ++ee+g++L +fA++ +++++f+++   
  XP_013603556.1 125 FGFIAANEAILTAVEGYAKVHIVDLSLTHCMQIPTLIDAIATKLNKPLLLKLTVVSSASNFppfINISYEELGSKLVNFATSRNIEMQFTIIpst 219
                     *********************************************************99999999**************************9886 PP

            GRAS 182 vakrledleleeLrvkp...gEalaVnlvlqlhrlldesvsles.....erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalf 268
                     +++ +++l l++Lr+ p   +Eal+Vn++++l +++de+++ +s      r+ +L++++sl+P++v+++e++ad++s ++++r+++a++y++  f
  XP_013603556.1 220 YSDGFSSL-LQHLRMYPtsyNEALVVNCHMMLRYIPDETLTPSSpsslsLRNVFLNQLRSLNPTMVTLIEEDADLTSDNLVTRLSSAFNYFWIPF 313
                     66777777.99999999999****************9998777666666899******************************************* PP

            GRAS 269 dsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgW 362
                     d++++ +   se+r+ +E+e ++++i+nvva+eg er+er+et+++W er+++  F+ v+++e+a+++ k++l +++ ++g++ +++++slvl+W
  XP_013603556.1 314 DTTDTFM---SEQRRLYEAE-ISWKIENVVAKEGVERVERTETKGRWLERMRDNEFGGVRVREEAVSELKAMLGEHAvGWGMKKDDDDESLVLTW 404
                     ******7...9*********.************************************************************************** PP

            GRAS 363 kdrpLvsvSaW 373
                     k++++v++++W
  XP_013603556.1 405 KGHSVVFATVW 415
                     *********** PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098543.1463395IPR005202Transcription factor GRAS
PfamPF035143.7E-9530415IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MTRTRIISPT RFPSLKSQRC GSGGDASFME QLLLHCATAI DSNDAALVHQ LLWVLNNIAS  60
PDGDSSTQRL TSAFVRALLS RAVSKIPTLF STFGNTVFQP PADEIHRFSV VELAGFIDLT  120
PWHRFGFIAA NEAILTAVEG YAKVHIVDLS LTHCMQIPTL IDAIATKLNK PLLLKLTVVS  180
SASNFPPFIN ISYEELGSKL VNFATSRNIE MQFTIIPSTY SDGFSSLLQH LRMYPTSYNE  240
ALVVNCHMML RYIPDETLTP SSPSSLSLRN VFLNQLRSLN PTMVTLIEED ADLTSDNLVT  300
RLSSAFNYFW IPFDTTDTFM SEQRRLYEAE ISWKIENVVA KEGVERVERT ETKGRWLERM  360
RDNEFGGVRV REEAVSELKA MLGEHAVGWG MKKDDDDESL VLTWKGHSVV FATVWVPI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B9e-512441782474Protein SHORT-ROOT
5b3h_B3e-512441728420Protein SHORT-ROOT
5b3h_E3e-512441728420Protein SHORT-ROOT
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, leaves and flowers. {ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013603556.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013603556.10.0PREDICTED: scarecrow-like protein 32
SwissprotQ9SN220.0SCL32_ARATH; Scarecrow-like protein 32
TrEMBLA0A0D3DRR70.0A0A0D3DRR7_BRAOL; Uncharacterized protein
STRINGBo8g079250.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54452750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.10.0GRAS family protein