PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013603326.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 415aa    MW: 46153.5 Da    PI: 8.2501
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013603326.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.92.2e-10146169326
                     S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                      e C+ f+r G C++Gd C FaHg
  XP_013603326.1 146 AEVCPEFRRDGDCSRGDDCEFAHG 169
                     589********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902293.53E-6142173IPR000571Zinc finger, CCCH-type
SMARTSM003566.6E-6143170IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.929143171IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-6144171IPR000571Zinc finger, CCCH-type
PfamPF006424.0E-8146169IPR000571Zinc finger, CCCH-type
SMARTSM003562.5179202IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010187Biological Processnegative regulation of seed germination
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MQYLLLSSCT HLSDQNTKHT QTRRRKTMDV AMRPTVDIPP RKLLLAESSP RYSPRKHNWN  60
SKVSNKIAIP EREEEKEDNN NSKETTKEYC YDSDTDDPYA SEHFRMFEFK IRRCTRSRSH  120
DWTDCPFAHP GEKARRRDPR RFQYSAEVCP EFRRDGDCSR GDDCEFAHGV FECWLHPIRY  180
RTEACKDGKH CKRKVCFFAH SPRQLRVLPP ENVSGGSASA SPAKNPCCMF CSSSPTSTLL  240
GNLSHLSRSP SLSPPLSPAS HKAAAFSRLR NRAASTVSEA VSAAAAAGSV NYNDVLTELV  300
NSLDSINLAE ALHVSSSSPV TTPVSGAAAA AFASSCGLSN QRLHLQQQQS SPLQFALSPS  360
TPSYLTNSPR PNIFSGEFTP PQRQINEFTA VRDKTSFEDG SCGDPDLGWV NDLLT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12126TRRRKT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013603326.10.0PREDICTED: zinc finger CCCH domain-containing protein 2
SwissprotQ9ZWA10.0C3H2_ARATH; Zinc finger CCCH domain-containing protein 2
TrEMBLA0A0D3DIQ40.0A0A0D3DIQ4_BRAOL; Uncharacterized protein
STRINGBra030542.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29872766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03790.11e-138C3H family protein