PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013601892.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 172aa    MW: 19004.3 Da    PI: 8.7287
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013601892.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.30.000121941223
                    EETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2  2 kCpdCgksFsrksnLkrHirt.H 23
                    +C+ C + F ++ +L +H +t H
  XP_013601892.1 19 ECSLCQRIFFTPQDLITHTNTfH 41
                    7*******************999 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.0371846IPR007087Zinc finger, C2H2
PROSITE patternPS0002802041IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MNGGFGMRKD LTRVSNPLEC SLCQRIFFTP QDLITHTNTF HSNHHYSNFS SSAAAPAPAT  60
FRHYPNLNRN PNPAFPAMNS SDLNNYRSGP TDEQGRLLKG SAAMTPARNT NVLFGQQEKP  120
KLMYLFPTMP SEGLRTLPLL SQLEERTPQD TATEQGGAIS SSIDLTLRLG FS
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013601892.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892460.0AC189246.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB017P15, complete sequence.
GenBankAC2324370.0AC232437.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB002B23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013601892.11e-125PREDICTED: uncharacterized protein LOC106309412
TrEMBLA0A0D3DZ081e-123A0A0D3DZ08_BRAOL; Uncharacterized protein
STRINGBo8g115550.11e-123(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM135511321
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04445.16e-32C2H2-like zinc finger protein