PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013601433.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 110aa    MW: 12659.7 Da    PI: 8.8425
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013601433.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3438.2e-14211001294
                     HTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
              B3  12 ksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                      ++ l +p  fa+ h  +k + k++t+ +++g  sWev +    ++ r ++++GW + v++  L +gDf+++k+++ +ef+l v
  XP_013601433.1  21 YLKFLPIPTYFADVHI-PK-TYKMVTIHHSNGnCSWEVVC--LVRKTRATFSSGWARLVREYPLSVGDFCTLKFIKPTEFHLAV 100
                     4566889****97774.33.45689999988879******..66667788***********************99988885544 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.53E-197101IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.5E-177102IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.54610104IPR003340B3 DNA binding domain
CDDcd100172.10E-1011102No hitNo description
SMARTSM010192.2E-1413104IPR003340B3 DNA binding domain
PfamPF023628.0E-1217100IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 110 aa     Download sequence    Send to blast
MKSNNDEDTV PVFNITIKTS YLKFLPIPTY FADVHIPKTY KMVTIHHSNG NCSWEVVCLV  60
RKTRATFSSG WARLVREYPL SVGDFCTLKF IKPTEFHLAV SKKVEEIMSD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013601433.13e-78PREDICTED: B3 domain-containing protein At3g17010-like
SwissprotQ9LSP61e-34Y3701_ARATH; B3 domain-containing protein At3g17010
TrEMBLA0A0D3DNY94e-77A0A0D3DNY9_BRAOL; Uncharacterized protein
STRINGBra018430.1-P3e-65(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56521135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G17010.19e-36B3 family protein