PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013600569.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 300aa    MW: 33932.7 Da    PI: 7.7812
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013600569.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH215.7e-07326226
                    -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                    k+ lC+ffa  G C  Gd+C F+H+
  XP_013600569.1  3 KRILCKFFAH-GACLKGDNCEFSHD 26
                    889***6666.*************5 PP

2zf-CCCH25.42.4e-083454526
                    --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                    +C f++r G C+yG+rC++ H+
  XP_013600569.1 34 ICTFYQR-GNCSYGSRCRYEHV 54
                    7**9999.***********997 PP

3zf-CCCH22.71.8e-07107129326
                     S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                     +++C+ +a+ G C++Gd+C+ +Hg
  XP_013600569.1 107 QPICS-YAAAGDCPRGDQCPHIHG 129
                     68999.**************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.187128IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-5127IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-4328IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.42E-8326IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.0512956IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-53153IPR000571Zinc finger, CCCH-type
SMARTSM003565.5E-53155IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.0E-53453IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-53454IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.507104131IPR000571Zinc finger, CCCH-type
SMARTSM003560.0025105130IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-4107129IPR000571Zinc finger, CCCH-type
SuperFamilySSF578503.28E-13163237No hitNo description
Gene3DG3DSA:3.30.40.108.5E-10166232IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001624.24E-4172232No hitNo description
PROSITE profilePS5008912.297173231IPR001841Zinc finger, RING-type
SMARTSM001842.8E-7173230IPR001841Zinc finger, RING-type
PfamPF000974.4E-7173230IPR018957Zinc finger, C3HC4 RING-type
PROSITE patternPS005180197206IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MSKRILCKFF AHGACLKGDN CEFSHDWKDP SNNICTFYQR GNCSYGSRCR YEHVKPSRPP  60
HPSPASSSTY LSSAFVSERD LSSSPAWTLA SLDDEVNNTD ATKPEDQPIC SYAAAGDCPR  120
GDQCPHIHGD LCPTCQKHCL HPFRPEEREE HKRSCEKKHK QLEALKLSQD VECCVCLERV  180
LSKPTPAERK FGILTECDHA FCIGCIRNWR SSAPSTGMDV NSTLRACPIC RKLSYFVVPS  240
VIWFSDPDEK KEIMDNYRDK LSLSGQLIAS TSILEMGTVR LGQVASTSMR FMMVVWRKWF
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bol.78811e-152leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892710.0AC189271.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB023L08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013600569.10.0PREDICTED: zinc finger CCCH domain-containing protein 69-like isoform X2
SwissprotE0X9N41e-152C3H69_ARATH; Zinc finger CCCH domain-containing protein 69
TrEMBLA0A0D3DQX20.0A0A0D3DQX2_BRAOL; Uncharacterized protein
STRINGBra016385.1-P1e-179(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-125C3H family protein