PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013600451.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 373aa    MW: 42035.8 Da    PI: 6.9312
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013600451.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.13.3e-05208227120
                     EEETTTTEEESSHHHHHHHH CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                     ++Cp C k+F+r  n++ H+
  XP_013600451.1 208 FSCPVCFKTFNRYNNMQMHM 227
                     89*****************9 PP

2zf-C2H215.16.6e-05292314123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     + C +Cgk+F  + + ++H +++
  XP_013600451.1 292 FMCRKCGKVFAVRGDWRTHEKNC 314
                     89*****************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.64208235IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.4E-6208227IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.38208230IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280210230IPR007087Zinc finger, C2H2
SuperFamilySSF576672.59E-6274312No hitNo description
Gene3DG3DSA:3.30.160.606.1E-5279312IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035537292312IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MTDPYSNFFT GWFKSNPFHH YPNSSTYPSP PPPSSFFFPH SGDLHRPPPA STPPPSPPLR  60
EALPLLSLSP ANKQQHHHDH QIQEPPSISM DVDYDHHHHQ DDHNLDDHDP DVTVALHIGL  120
PSPSPQDMAS LLMMSSSSSS SRPTTHYLED MNGKKDLDND YHQGGVGGGE DDDEDSVGGD  180
GGCRISRLNK GQYWIPTPSQ ILIGPTQFSC PVCFKTFNRY NNMQMHMWGH GSQYRKGPES  240
LRGTQPTGML RLPCYCCAPG CRNNIDHPRA KPLKDFRTLQ THYKRKHGIK PFMCRKCGKV  300
FAVRGDWRTH EKNCGKLWYC ICGSDFKHKR SLKDHIKAFG NGHGAYGIDG FDEEDEPASE  360
VEQLDNDHES ISK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in developing carpels (PubMed:17600712). Expressed in the shoot apical meristem and the replum (PubMed:25039392). {ECO:0000269|PubMed:17600712}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013600451.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF2544470.0AF254447.1 Arabidopsis thaliana WIP2 protein (WIP2) mRNA, complete cds.
GenBankBT0210890.0BT021089.1 Arabidopsis thaliana At3g57670 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013600451.10.0PREDICTED: zinc finger protein WIP2
SwissprotQ9SVY10.0ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A0D3DU040.0A0A0D3DU04_BRAOL; Uncharacterized protein
STRINGBo8g092070.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23928237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-167C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]