PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013600340.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 418aa    MW: 45967.1 Da    PI: 9.7558
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013600340.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2130.0003179201223
                     EETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                      Cp C + F+  ++L++H+ + H
  XP_013600340.1 179 ACPQCEEIFPKLETLEHHQAVrH 201
                     6******************9888 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280178201IPR007087Zinc finger, C2H2
SuperFamilySSF563992.01E-21203414No hitNo description
Gene3DG3DSA:3.90.228.101.5E-12206415IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MAPLPLIPNQ TQSQTRLSSS DPKKKKSRKK QTPLPQTQTQ TQTLKKKTVQ SSSSSWSQIK  60
NLLSCKQIEG PRVHEPSKIT SSSCGSSLCK FSDVSYGNAR VIHRSDHSPE SSNLGQDAGL  120
LTRKPVTRGS SSTVISNGCG AYTSYSSSKA MQFRKLSGCY ECHMIVDPSR YPVSPRICAC  180
PQCEEIFPKL ETLEHHQAVR HAVSELGPED SGRNIVDIIF KSSWLRKDSP IYNIERILKV  240
HNTQRTIQRF EDCRDAVKSQ VHASTRKEPR SAADGNELLR FQCTTVSCSL GSRGSTSLCS  300
NFPGCRVCTI IRHGFHAKTL RLGGGANEIK GVRTTASSGR AHDASRCFDQ RRAMLVCRVI  360
AGRVRRVQSD AQEDENGSGS YDSVAGPAGV YTNLDDLVVF NPKAILPCFV VIYKVSEP
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013600340.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895460.0AC189546.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH004M10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013600340.10.0PREDICTED: uncharacterized protein LOC106307823
RefseqXP_013600341.10.0PREDICTED: uncharacterized protein LOC106307823
TrEMBLA0A0D3DJW80.0A0A0D3DJW8_BRAOL; Uncharacterized protein
STRINGBo8g016650.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19162880
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.11e-144C2H2-like zinc finger protein