PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013600092.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 467aa    MW: 51404.1 Da    PI: 9.2369
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013600092.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.40.0001183103323
                     ETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                     C+ C+k F r  nL+ H r H
  XP_013600092.1  83 CEVCNKGFQREQNLQLHRRGH 103
                     *******************88 PP

2zf-C2H211.50.00095158179223
                     EETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                      C++C+k++  +s+ k H + +
  XP_013600092.1 158 NCEKCSKRYAVQSDWKAHSKIC 179
                     6*****************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.04E-680103No hitNo description
Gene3DG3DSA:3.30.160.608.7E-680103IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.9781103IPR007087Zinc finger, C2H2
SMARTSM003550.02581103IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028083103IPR007087Zinc finger, C2H2
SMARTSM0035558122152IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.607.6E-5145178IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.04E-6152177No hitNo description
SMARTSM00355220157177IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MSSSYNNTIS SSSTQSFLLP SAATGSNNFN REETAMTMIQ QPNSVAPPPP PKKRRNQPGN  60
SYPDAEVIAL SPKTIMATNR FLCEVCNKGF QREQNLQLHR RGHNLPWKLK QKSNKEVRRK  120
VYICPEPTCV HHDPSRALGD LTGIKKHYYR KHGEKKWNCE KCSKRYAVQS DWKAHSKICG  180
TKEYRCDCGT IFSRRDSYIT HRAFCDALIQ ESARNPTVSF TAMAAASGGG GRHGFYGGAS  240
SALSHNHFGN NSNTGFTPLA AGYNLNRSSS EKFEDFIPQP TNPYHGPNNF LMQCSSNQGL  300
LAHNDQSLLN QHGMISLGDT INNNNNNLFN LGNFQHNIKN SDQISVPSLF ADGAENNHPS  360
ALLRGLTSSS SSSAVVNEFG DNENGNLHGL MNSLATTTDQ QGRSGSSIFD LHFGNNLSMG  420
GSDRLTLDFL GVNGRVMSNV NGRGGRNPVP LDTEMKFSQP NHPFERA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-32153219369Zinc finger protein JACKDAW
5b3h_F1e-32153219369Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013600092.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3531830.0AK353183.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-38-E19.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013600092.10.0PREDICTED: protein indeterminate-domain 6, chloroplastic-like
RefseqXP_013600093.10.0PREDICTED: protein indeterminate-domain 6, chloroplastic-like
RefseqXP_013600094.10.0PREDICTED: protein indeterminate-domain 6, chloroplastic-like
SwissprotQ8RWX70.0IDD6_ARATH; Protein indeterminate-domain 6, chloroplastic
TrEMBLA0A0D3DXC10.0A0A0D3DXC1_BRAOL; Uncharacterized protein
TrEMBLA0A3P6GJR50.0A0A3P6GJR5_BRAOL; Uncharacterized protein
STRINGBo8g106710.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36781759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14580.20.0C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  3. Bustillo-AvendaƱo E, et al.
    Regulation of Hormonal Control, Cell Reprogramming, and Patterning during De Novo Root Organogenesis.
    Plant Physiol., 2018. 176(2): p. 1709-1727
    [PMID:29233938]