PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013599323.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 464aa    MW: 51271.6 Da    PI: 6.6055
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013599323.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.10.00014125147123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++Cp+Cg +F++ ++  +H  ++
  XP_013599323.1 125 FECPICGNPFKTEEEVSVHVESC 147
                     89*****************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.725125152IPR007087Zinc finger, C2H2
CDDcd092124.65E-21178267No hitNo description
SuperFamilySSF1435035.49E-18182246IPR018997PUB domain
SMARTSM005802.6E-23184251IPR018997PUB domain
PfamPF094091.5E-17184250IPR018997PUB domain
SuperFamilySSF542362.84E-12330439IPR029071Ubiquitin-related domain
PROSITE profilePS5003310.161355439IPR001012UBX domain
Gene3DG3DSA:3.10.20.901.5E-7355438No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0050832Biological Processdefense response to fungus
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 464 aa     Download sequence    Send to blast
MDDVKDKLKG FMKKVNLSSS SGKFKGSGRV LGSSSSAPVN PIQNRFNPPQ SSKPKPNPNQ  60
TPRPAKPSPS PSPSAALPEK PVSSGSQKKP DPDPVRAPPQ DGFDPFGAFI TSSNRSQNGY  120
SLNMFECPIC GNPFKTEEEV SVHVESCLGE DTTTNGDEAS SEEKDKSEVE KLVVVYLSGK  180
PSESSVDVLL RLLKNIVKEP ENGKFRKIRM SNAKIKEAIG DVAGGVELLE LVGFELKEEN  240
DEIWAVMDVP GGDQTQLINE VVGMLEKRKI EMSRKDEVLP VEPVAAAPKK IDREIRVFFS  300
VAENVASKIE VPDSFYSLSA DEIKREADLR RKKIAESQLL IPRSYKEKQA KAARKRYKRS  360
MIRVQFPDGV VLQGVFAPWE PTFALYEFVS SALKEPSLQF ELLDPVLVKR RVIPHTPAPG  420
QKPRTLEDEE LVPSALIKFR PIETASLVYT GLCNELLEIS EPLT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ifw_A2e-1231043923146Tether containing UBX domain for GLUT4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1352360ARKRYKRSM
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bol.140370.0leaf
Functional Description ? help Back to Top
Source Description
UniProtFacilitates the interaction of SYP31 and CDC48A, thereby regulating an CDC48A membrane-associated function (Ref.8). Appears to act as a negative regulator mediating the powdery mildew-plant interaction (PubMed:19176722, PubMed:23301616). {ECO:0000269|PubMed:19176722, ECO:0000269|PubMed:23301616, ECO:0000269|Ref.8}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013599323.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced in response to powdery mildew and by benzothiadiazole (BTH) treatment. {ECO:0000269|PubMed:19176722}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1189111e-173AK118911.1 Arabidopsis thaliana At2g01650 mRNA for unknown protein, complete cds, clone: RAFL21-25-I03.
GenBankAY5727821e-173AY572782.1 Arabidopsis thaliana CDC48-interacting UBX-domain protein (PUX2) mRNA, complete cds.
GenBankBT0054081e-173BT005408.1 Arabidopsis thaliana clone U51117 unknown protein (At2g01650) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013599323.10.0PREDICTED: plant UBX domain-containing protein 2
SwissprotQ9ZU930.0PUX2_ARATH; Plant UBX domain-containing protein 2
TrEMBLA0A0D3DA540.0A0A0D3DA54_BRAOL; Uncharacterized protein
TrEMBLA0A3P6EXP10.0A0A3P6EXP1_BRAOL; Uncharacterized protein
STRINGBo7g078630.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM98351618
Publications ? help Back to Top
  1. Suzuki T,Park H,Till EA,Lennarz WJ
    The PUB domain: a putative protein-protein interaction domain implicated in the ubiquitin-proteasome pathway.
    Biochem. Biophys. Res. Commun., 2001. 287(5): p. 1083-7
    [PMID:11587532]
  2. Rancour DM,Park S,Knight SD,Bednarek SY
    Plant UBX domain-containing protein 1, PUX1, regulates the oligomeric structure and activity of arabidopsis CDC48.
    J. Biol. Chem., 2004. 279(52): p. 54264-74
    [PMID:15498773]
  3. Chandran D,Rickert J,Cherk C,Dotson BR,Wildermuth MC
    Host cell ploidy underlying the fungal feeding site is a determinant of powdery mildew growth and reproduction.
    Mol. Plant Microbe Interact., 2013. 26(5): p. 537-45
    [PMID:23301616]