PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013599237.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 157aa    MW: 17218.7 Da    PI: 10.397
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013599237.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.48.3e-192877255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     ykG+r +k +g+WvAeIr+p   +kr r++lg++ t+e Aa+a++ a  +l+g
  XP_013599237.1 28 PYKGIRMRK-WGKWVAEIREP---NKRSRIWLGSYSTPEAAARAYDTAVFYLRG 77
                    69*****99.**********9...336*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.8132885IPR001471AP2/ERF domain
SMARTSM003809.1E-392891IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-222886IPR016177DNA-binding domain
PRINTSPR003674.0E-92940IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.3E-312986IPR001471AP2/ERF domain
CDDcd000181.86E-262987No hitNo description
PfamPF008472.7E-122977IPR001471AP2/ERF domain
PRINTSPR003674.0E-95167IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
METAMEVAAA VPTSTVAAAA AARKREKPYK GIRMRKWGKW VAEIREPNKR SRIWLGSYST  60
PEAAARAYDT AVFYLRGPSA RLNFPELLAG VTVAGGNGGG DMSAAYIRRK AAEVGAQVDA  120
LEAAGGNRHH HHQQYQRVSM MLCTVQYLKF GWQHVGE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-162785463ATERF1
3gcc_A3e-162785463ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00020PBMTransfer from AT4G36900Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2325121e-159AC232512.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB065B14, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013599237.11e-113PREDICTED: ethylene-responsive transcription factor RAP2-10-like isoform X2
RefseqXP_013599238.11e-113PREDICTED: ethylene-responsive transcription factor RAP2-10-like isoform X2
SwissprotQ9SW633e-64RA210_ARATH; Ethylene-responsive transcription factor RAP2-10
TrEMBLA0A0D3DI452e-95A0A0D3DI45_BRAOL; Uncharacterized protein
STRINGBra017811.1-P5e-91(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36900.11e-58related to AP2 10