PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013599232.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 509aa    MW: 55148.1 Da    PI: 9.2501
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013599232.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.97.7e-0582104123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     + C  C+k F r  nL+ H r H
  XP_013599232.1  82 FICDVCKKGFQREQNLQLHRRGH 104
                     89*******************88 PP

2zf-C2H212.70.00038158180123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC +C+k++  +s+ k H +t+
  XP_013599232.1 158 WKCDKCSKRYAVQSDWKAHSKTC 180
                     58*****************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.2E-781104No hitNo description
PfamPF139121.0E-481104IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.2E-581104IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.61682104IPR007087Zinc finger, C2H2
SMARTSM003550.01482104IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028084104IPR007087Zinc finger, C2H2
SMARTSM0035565123153IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.1E-5145179IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.2E-7153178No hitNo description
SMARTSM00355140158178IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 509 aa     Download sequence    Send to blast
MSTSSYNTSA VPSSSSTQPF FITGSSAGDN AFDRKDTFMS MVQQPNSSAP QPKKRRNQPG  60
NPNPDAEVVA LSPTTLMATN RFICDVCKKG FQREQNLQLH RRGHNLPWKL KQKSTKEVKR  120
KVYICPEPTC VHHDPARALG DLTGVKKHYY RKHGEKKWKC DKCSKRYAVQ SDWKAHSKTC  180
GTKEYRCDCG TIFSRRDSYI THRAFCDALI QETVRNPTVS FTSMTAASSG AGFRGFHGKL  240
EGGNALSHQH LSDHPNSGFS SFGGYNLNIA SSENSREFAP QTSNPNFLIQ CSSSQGMLPA  300
PNNNNNDQSF MNQQGLIQFD PVNNINLKSS TTNNSFFNLG FFQENTKNSE TAIPSLYSTD  360
SLVHHREESL NAGSNVSATA LLQKATQLGS ITSNDPSALF RSLASSSNSS SVVVNDFGGG  420
QIMGNDNNGN LQGLMNSLVA VNGGGAGGSG GNIFDVDFGN NNVNMSGSDN LTLDFLGVGG  480
MVRNVNRGGA GRGRVRGDVS LNGELKFPE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-32154220369Zinc finger protein JACKDAW
5b3h_F2e-32154220369Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may act a transcriptional activator of nuclear-encoded photosynthetic gene expression (Probable). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:24821766, ECO:0000305|PubMed:19726569}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00256DAPTransfer from AT2G02080Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013599232.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by gibberellin. {ECO:0000305|PubMed:17933900}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013599228.10.0PREDICTED: protein indeterminate-domain 4, chloroplastic-like
RefseqXP_013599229.10.0PREDICTED: protein indeterminate-domain 4, chloroplastic-like
RefseqXP_013599230.10.0PREDICTED: protein indeterminate-domain 4, chloroplastic-like
RefseqXP_013599231.10.0PREDICTED: protein indeterminate-domain 4, chloroplastic-like
RefseqXP_013599232.10.0PREDICTED: protein indeterminate-domain 4, chloroplastic-like
RefseqXP_013599233.10.0PREDICTED: protein indeterminate-domain 4, chloroplastic-like
RefseqXP_013599234.10.0PREDICTED: protein indeterminate-domain 4, chloroplastic-like
RefseqXP_013736158.10.0protein indeterminate-domain 4, chloroplastic-like
RefseqXP_013736159.10.0protein indeterminate-domain 4, chloroplastic-like
RefseqXP_013736160.10.0protein indeterminate-domain 4, chloroplastic-like
RefseqXP_013736161.10.0protein indeterminate-domain 4, chloroplastic-like
RefseqXP_022560774.10.0protein indeterminate-domain 4, chloroplastic-like
RefseqXP_022560776.10.0protein indeterminate-domain 4, chloroplastic-like
SwissprotQ8GYC10.0IDD4_ARATH; Protein indeterminate-domain 4, chloroplastic
TrEMBLA0A0D3DAB20.0A0A0D3DAB2_BRAOL; Uncharacterized protein
STRINGBo7g080200.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02080.10.0indeterminate(ID)-domain 4
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]