PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013599182.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family TCP
Protein Properties Length: 382aa    MW: 41987.6 Da    PI: 7.6184
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013599182.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP123.13.1e-38531942136
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt......ssssaseceaesssssasnsssg.. 88 
                      g+kdrhsk+ T++g+RdRRvRls+++a +f+dLqd+LG+d++sk++eWL+++a+ +i el+++              ++++++  + +   +  
  XP_013599182.1  53 SGGKDRHSKVWTSKGPRDRRVRLSVSTALQFYDLQDRLGYDQPSKAVEWLIKAAEDSISELPSLnntnfpM-------NDDDNQIPTLTG--Asp 138
                     689*************************************************************4433331.......222222222211..122 PP

             TCP  89 ......kaaksaa.kskksqksaasalnlak.esrakarararertrekmriknkl 136
                           ++ +++a +s++++++++s l+l++ e r kar+rarert+++ + ++ +
  XP_013599182.1 139 taaaaaNSLSKSAcSSNSDTSKNSSGLSLSRsEMRDKARERARERTAKETKERDGN 194
                     444555455555547778888888889999999**************999888665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036349.7E-3954190IPR005333Transcription factor, TCP
PROSITE profilePS5136931.22955113IPR017887Transcription factor TCP subgroup
PROSITE profilePS513709.926170191IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MVIEKLRNEI IGDDEMIGDL MKNNNGDVVD NSNNRLSRWH HNSSRIIRVS RASGGKDRHS  60
KVWTSKGPRD RRVRLSVSTA LQFYDLQDRL GYDQPSKAVE WLIKAAEDSI SELPSLNNTN  120
FPMNDDDNQI PTLTGASPTA AAAANSLSKS ACSSNSDTSK NSSGLSLSRS EMRDKARERA  180
RERTAKETKE RDGNNNHHTT SFTDLLNSGS DPVNTNRQWM APSSSPAPME YFSSGLILGS  240
GQTHFPIQTN SHPFSDHHHH PHQEFSFVPD HLISPAGSNG GGAFNLDFNM STTSVASTGF  300
SGFNRGTLQS NSTNHHQSFL ANLQRFPSSE GGGGGPQFLF GTGNALPAEN QHPHHNNNNN  360
HQFQLYYENG CRNSDQKGKG KN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A7e-2460114155Putative transcription factor PCF6
5zkt_B7e-2460114155Putative transcription factor PCF6
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: During flower development, first observed throughout the floral meristem. Later expressed in rapidly growing floral primordia. Detected to a lower extent in vegetative primordia. During flower development, first observed throughout the floral meristem. Expressed during ovule development (PubMed:25378179). {ECO:0000269|PubMed:10363373, ECO:0000269|PubMed:25378179}.
UniprotTISSUE SPECIFICITY: Expressed in cotyledons, particularly in the vascular region, in leaves, roots, buds, flowers and immature siliques. {ECO:0000269|PubMed:17307931}.
Functional Description ? help Back to Top
Source Description
UniProtPlays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). Participates in ovule develpment (PubMed:25378179). Promotes light-regulated transcription of CHS, CAB, HYH and HY5. Regulates positively photomorphogenesis (e.g. hypocotyl elongation inhibition and cotyledon opening in response to blue light) (PubMed:26596765). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179, ECO:0000269|PubMed:26596765}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013599182.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the miRNA miR-JAW (PubMed:12931144). Induced by blue light. Stabilized by light but labile in darkness due to proteasome-dependent proteolysis (at protein level) (PubMed:26596765). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:26596765}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895530.0AC189553.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH006A08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013599182.10.0PREDICTED: transcription factor TCP2-like
SwissprotQ93V430.0TCP2_ARATH; Transcription factor TCP2
TrEMBLA0A0D3DEU80.0A0A0D3DEU8_BRAOL; Uncharacterized protein
STRINGBo7g105960.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM76152539
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.21e-131TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2
Publications ? help Back to Top
  1. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]
  2. Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C
    Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2018. 176(2): p. 1694-1708
    [PMID:29133375]